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2022-08-22VisIt: add conduit and mfem variants (#32255)Eric Brugger1-0/+30
2022-08-22keepassxc: option autotype with pcsclite (#32288)Olivier Cessenat1-0/+4
2022-08-22openfoam-org: add v9 and v10 (#32274)Jonas Thies1-0/+10
2022-08-22Molden: update URLs. (#32207)Rémi Lacroix1-2/+2
2022-08-22baurmc: correct compile flag (#31305)Valentin Volkl1-1/+5
2022-08-22prophecy4f: add hep tag, install to share (#31308)Valentin Volkl1-0/+4
2022-08-22hip@4.5.2: fix installation (#31416)Cory Bloor3-24/+36
In a fast-moving project with as many forks as LLVM, it's difficult to accurately determine if a function exists just by checking the version number. The existing version check fails, for example, with llvm-amdgpu from ROCm 4.5. It is more robust to directly check if the function exists.
2022-08-22VASP: add v6.3.2; handle changes to makefile.include naming pattern (#31701)Alan Sill1-0/+5
Added the SHA256 for version 6.3.2 and added logic to eal with the change of naming pattern for the makefile.include files that now appears to leave out the "linux_" prefix. (Changes should be. backwards compatible.) Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: alansill <alansill@users.noreply.github.com>
2022-08-22feynhiggs: update url (#31760)haralmha1-2/+2
2022-08-22py-isort: add v5.10.1 (#32302)Adam J. Stewart1-0/+1
2022-08-21qscintilla: coherence with py-sip (#32128)Olivier Cessenat1-8/+9
2022-08-21gcc: add 12.2.0 (#32270)Wileam Y. Phan1-0/+1
2022-08-20py-vermin: add latest version 1.4.2 (#32287)Morten Kristensen1-1/+2
2022-08-20Ascent, Conduit & VTK-h: don't assume I have Fortran (#32285)Axel Huebl3-5/+8
* VTK-h: don't assume I have Fortran Don't assume I have a working Fortran compiler in my toolchain :) * Conduit: Do not Assume Fortran * Ascent: Do not Assume Fortran * fix style
2022-08-20WarpX: Add hints for FindMPI (#31842)kwryankrattiger1-2/+7
This seems to be needed on some cray systems and is safe on normal desktops.
2022-08-20gxsview: new version 2022.05.09 (#32289)Olivier Cessenat1-2/+7
2022-08-20Vis: macOS `llvm-openmp` (#32284)Axel Huebl3-0/+4
Add some OpenMP lib provider for Apple-Clang to the vis packages.
2022-08-20Enable Tensorflow for ROCm. Add ROCm dependencies. (#32248)Sreenivasa Murthy Kolam1-3/+31
* Build Tensorflow using the fork for rocm. Initial commit * re-order the versions * fix style errors * address review comments * add conflicts for rocm version * address review comments * remove rocm variant as its added by ROCmPackage
2022-08-19py-globus-sdk: add new versions; unpin py-cryptography version constraint ↵eugeneswalker1-1/+7
(#32280) * add mothra tests * py-globus-sdk: add new versions; unpin py-cryptography version constraint * Update var/spack/repos/builtin/packages/py-globus-sdk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19py-pyjwt: fix py-cryptography version constraints (#32279)eugeneswalker1-2/+2
* py-pyjwt: fix py-cryptography version constraints * Update var/spack/repos/builtin/packages/py-pyjwt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19py-setuptools: add v64.0.0 (#32078)Adam J. Stewart2-2/+11
2022-08-19Doc: WarpX SENSEI Work-Around (#32276)Axel Huebl1-0/+2
Follow-up to #31542
2022-08-19netcdf-cxx: Update the download URL (#32275)Rémi Lacroix1-1/+1
2022-08-19py-pygments: add v2.13.0 (#32168)Adam J. Stewart1-1/+3
2022-08-19ForTrilinos: new versions 2.0.1, 2.1.0 (#32265)Seth R. Johnson1-10/+9
* ForTrilinos: new versions 2.0.1, 2.1.0 I also had to update the checksum for the released 2.0.0: see #32000 for the explanation and solution to keep this from happening again. * Soooo stylish
2022-08-19ncurses 6.3 restrict patch (#32271)Harmen Stoppels1-1/+1
2022-08-19pcsclite: add new package (#32129)Olivier Cessenat1-0/+50
2022-08-19py-macholib: add v1.16 (#31967)Seth R. Johnson1-1/+2
* py-macholib: add v1.16 * Update dependencies Even 1.11 requires `altgraph (>=0.15)`. The lastest requires no additional dependencies.
2022-08-19htslib, samtools: add v1.15 and v1.15.1 (#32259)dunatotatos2-0/+7
2022-08-19ghostscript: new version 9.56.1 (#32088)Olivier Cessenat1-0/+1
2022-08-19xpmem: fix configure with ~kernel-module (#32258)iarspider1-1/+1
2022-08-19Add tracy variant to pika (#32090)Mikael Simberg1-0/+3
2022-08-18hpctoolkit: update git url from github to gitlab (#32252)Mark W. Krentel1-1/+1
2022-08-18kassiopeia: new version 3.8.2 (#32254)Wouter Deconinck1-1/+5
* kassiopeia: new version 3.8.2 There was no version 3.8.1, so here is the diff with 3.8.0: https://github.com/KATRIN-Experiment/Kassiopeia/compare/v3.8.0...v3.8.2 Build system changes: - default `cxxstd` is now 17. * kassiopeia: updated hash * kassiopeia: use spec.satisfies Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-18Sensei v4 (#30432)kwryankrattiger6-36/+145
* Sensei: Refactor package to work with v4.0.0 * Add missing MPI dependency * Patch bug in libsim adapter * Simplify conflicts with when-clauses * Conflict variants that are incompatible (catalyst/libsim/ascent) * Fix paraview version constraints to be more clear * Add version constraints for VTK * Drop unneeded visit restrictions * Specify +vtkm dependency on ParaView's VTKm * +hl is not needed for VTK, and is already specified in the VTK recipe when it is needed * Pass paths for adios2 and ascent packages * ECP-SDK: Enable sensei * CI: Add sensei to the data-vis-sdk pipeline * Sensei: Change VISIT_DIR to work on linux * Fixup: style check * Sensei: Add patch for version detection * CI: revert SDK pipeline in favor of new matrices * Sensei: Formatting fixes
2022-08-18pasta: missing setuptools dep (#32220)snehring1-16/+29
* pasta: missing setuptools dep * pasta: remove extraneous which * pasta: convert to PythonPackage * pasta: specify dendropy version
2022-08-18py-rasterio: add v1.3.1 (#32244)Adam J. Stewart1-0/+1
2022-08-18added qt-creator 5.0.3 (#32241)Gregory Lee1-0/+1
* added qt-creator 5.0.3 * [@spackbot] updating style on behalf of lee218llnl Co-authored-by: lee218llnl <lee218llnl@users.noreply.github.com>
2022-08-18autoconf-archive: fetch patch from github (#32232)Sergey Kosukhin2-32/+8
* autoconf-archive: fetch patch from github * autoconf-archive: do not try to patch libtool
2022-08-18Add patch for MEM_* group for Intel Icelake SP for 5.2.0 and newer (#32235)Thomas Gruber1-0/+5
2022-08-18ascent: fix oneapi build (#32239)Robert Cohn1-0/+2
2022-08-18e4s ci stack: add catalyst build (#31993)eugeneswalker1-1/+22
2022-08-18flux-sched: fix oneapi build (#32233)Robert Cohn1-0/+2
2022-08-18latex2html: new version V2022.2 (#32089)Olivier Cessenat1-0/+1
2022-08-18hiredis: set install_name on macos, ccache: optional hiredis (#32219)Axel Huebl2-2/+15
* hiredis: set install_name on macos * ccache: make hiredis optional Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-08-17Update busco to 5.4.3 (#32221)snehring3-4/+90
* metaeuk: new package * sepp: new package * busco: adding version 5.4.3 * busco: adding maintainers * metauk: more accurate cmake dep * sepp: adding missing dep and accurate python dep * sepp: remove install_tree * sepp: extend python
2022-08-18py-pytorch-lightning: add v1.7.2 (#32226)Adam J. Stewart1-0/+1
2022-08-17mpich: add patch fixing MPI_MIN for unsigned integers (#32188)Sergey Kosukhin1-0/+8
2022-08-17bugfix: use cmake version from dependency (#31739)Tom Scogland8-0/+31
Ensure that build tools with module-level commands in spack use the version built as part of their build graph if one exists. This is now also required for mesa, scons, cmake and ctest, out of graph versions of these tools in path will not be found unless added as an external. This bug appeared because a new version of rocprim needs cmake 3.16, while I have 3.14 in my path I had added an external for cmake 3.20 to the dag, but 3.14 was still used to configure rocprim causing it to fail. As far as I can tell, all the build tools added in build_environment.py had this problem, despite the fact that they should have been resolving these tools by name with a path search and find the one in the dag that way. I'm still investigating why the path searching and Executable logic didn't do it, but this makes three of the build systems much more explicit, and leaves only gmake and ninja as dependencies from out in the system while ensuring the version in the dag is used if there is one. The additional sqlite version is to perturb the hash of python to work around a relocation bug which will be fixed in a subsequent PR.
2022-08-17LLVM: add @15.0.0-rc1 (#31945)牟展佑1-1/+2