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2017-04-07remove mxml CFLAGS option that was breaking configure (fixes #3700) (#3706)Mark Olesen1-4/+7
- provide urls for versions 2.7, 2.6, 2.5 (archive copies)
2017-04-07subversion: spec.satisfies('^swig') does not work; replace spec.satisfies by ↵Milton Woods1-2/+2
"in spec" (#3662)
2017-04-07Package: ISAAC (#3733)Axel Huebl2-0/+102
Adds the [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac) in situ volume rendering library. The ISAAC library can be build with render/filter kernels for Nvidia GPUs via CUDA or with a more general backend via [Alpaka](https://github.com/ComputationalRadiationPhysics/alpaka) with support for Nvidia GPUs (via CUDA) and multicore CPUs. Since alpaka is not yet part of spack, the second variant is still commented out. Packages - `isaac`: header-only library with dependencies to other C++ libraries that is then used in simulations - `isaac-server`: stand-alone executable that connects N simulations with M clients in a `N simulations:1 server` and `1 server:M clients` fashion (ISAAC clients simply speak websockets/JSON and are usually [HTML/JS pages](https://github.com/ComputationalRadiationPhysics/isaac/tree/v1.2.0/client)) Downstream Usage PIConGPU uses ISAAC for in situ visualization. References - [Repo](https://github.com/ComputationalRadiationPhysics/isaac) (LGPLv3+) - [Documentation](http://computationalradiationphysics.github.io/isaac/) - [Talk at GTC2016](http://on-demand.gputechconf.com/gtc/2016/video/S6294.html)
2017-04-07mallocMC: Spack Package (#3745)Axel Huebl1-0/+55
Adds a package for mallocMC, a memory allocator for many core architectures. This project provides a framework for fast memory managers on many core accelerators. Currently, it supports NVIDIA GPUs of compute capability sm_20 or higher through the ScatterAlloc algorithm. mallocMC is header-only. Downstream Dependencies PIConGPU and other projects of HZDR's *Computational Radiation Physics* group References - Markus Steinberger, Michael Kenzel, Bernhard Kainz and Dieter Schmalstieg. *ScatterAlloc: Massively parallel dynamic memory allocation for the GPU*, Innovative Parallel Computing (InPar), 2012, https://doi.org/10.1109/InPar.2012.6339604 - Carlchristian Eckert. *Enhancements of the massively parallel memory allocator ScatterAlloc and its adaption to the general interface mallocMC*, Junior Thesis (grosser Beleg), 2014, http://dx.doi.org/10.5281/zenodo.34461
2017-04-07Tell libedit to link to -lncursesw (#3752)Adam J. Stewart1-1/+5
2017-04-07gromacs: added 5.1.4 and 2016.3 (#3758)Christoph Junghans1-0/+2
2017-04-07Fix ncurses support in bash package (#3735)Adam J. Stewart1-10/+16
2017-04-07fix dependencies of py-pynn (#3756)healther1-7/+6
2017-04-07Abinit: a few modernizations for the package and its dependencies (#3699)Massimiliano Culpo4-82/+179
* libxc: added libs interface * hdf5: added libs interface, added conflicts * abinit: modernized package to use build interface * netcdf-fortran: added libs interface * abinit: added version 8.2.2
2017-04-06cuda_memtest: Package of CRP (#3747)Axel Huebl1-0/+45
This adds a maintained version of the (since 2012) stalled original project. https://github.com/ComputationalRadiationPhysics/cuda_memtest Nvidia's NVML (via the GPU deployment kit) could also be added, providing serial number output of failing GPUs for multi-GPU nodes.
2017-04-06Add Votca packages (#3748)Christoph Junghans2-0/+109
* A new package: votca-tools * A new package: votca-csg
2017-04-06Add package for OpenSSH (#3750)Todd Gamblin1-0/+54
2017-04-06A new package: legion (#3738)Christoph Junghans1-0/+62
2017-04-06Update version info to include v1.5.5 (#3743)George Hartzell1-3/+3
* Update version info to include v1.5.5 * Clean up url specifications.
2017-04-06spglib requires setuptools during runtime (#3744)Adam J. Stewart1-1/+3
2017-04-06deal.ii: add 8.5.0 (#3741)Denis Davydov1-0/+1
2017-04-06libSplash & PNGwriter: CMakePackage (#3739)Axel Huebl2-18/+2
Use new CMakePackage base class
2017-04-06Fix wx (#3734)Michael Kuhn1-0/+1
It is missing a pkg-config dependency.
2017-04-06PNGwriter: 0.6.0 (#3732)Axel Huebl1-0/+1
Adds the latest release of PNGwriter.
2017-04-06Fix libdwarf/elfutils conflictTodd Gamblin1-0/+5
2017-04-06A new package: xqilla. (#3731)健美猫1-0/+56
2017-04-06Openmpi cuda support (#3725)Jimmy Tang2-2/+14
* Update cuda to latest ga2 release * Add CUDA support to openmpi * Use spec's lib directories for cuda * flake8 compliance
2017-04-06Add zip package (#3715)Michael Kuhn2-0/+47
2017-04-06Fix magics (#3721)Michael Kuhn1-0/+6
- magics requires perl and perl-xml-parser. - xml2cc_new.pl uses /usr/bin/perl by default.
2017-04-05Fixes patch paths for earlier boost versions (#3712)Josh Asplund2-1/+44
* Fixes patch paths for earlier boost versions The directory structure of boost changed at version 1.56.0, so the patch being used for python support did not work on earlier versions. This adds another patch that matches earlier versions. * Removes commented out code
2017-04-05Fixes needed to build htop (#3691)Adam J. Stewart6-5/+10
* Fixes needed to build htop * Build libncursesw.so, not libncurses.so * Remove htop hack now that it is picking up newer ncurses * Tell packages to link to new ncursesw libraries
2017-04-05subversion: provide checksums for versions 1.8.17 and 1.9.5 (#3663)Milton Woods1-1/+3
* subversion: provide checksums for versions 1.8.17 and 1.9.5 * subversion: release versions sorted from newest to oldest
2017-04-05petsc trilinos: fix Scalapack via MKL (#3702)Denis Davydov2-3/+16
* petsc trilinos: fix Scalapack via MKL * indentation
2017-04-05update versions for scalasca and related tools (#3697)Mark Olesen4-64/+59
- clean up fetch urls - inherit from AutotoolsPackage instead of Package - explicit fPIC flags look suspicious, but leave them in there. - in scalasca, use the cube version that is implicit from the scorep dependency instead of specifying it twice.
2017-04-05Fix libxpm (#3704)Michael Kuhn1-0/+5
It tries to use gettext but fails because it does not explicitly link against libintl.
2017-04-05Fix ncl (#3708)Michael Kuhn2-1/+23
- Add patch to make ncl compile with hdf5 1.10. - Add missing dependencies to make ncl compile without errors.
2017-04-05Add stress package (#3695)Adam J. Stewart1-0/+37
2017-04-05Add versions 3.2.0 3.1.0 for protobuf. (#3698)健美猫1-7/+9
2017-04-04Add package for open source Shiny Server (#3688)George Hartzell1-0/+77
* The beginnings of a package for shiny-server Just stashing a WIP. This doesn't work. This goes for a while and/but blows up with some OpenSSL related issue. * Make it work! Yay! * shiny-server needs R with X support My environment gets this for "free" from my packages.yaml, but it should be explicity. * Address feedback - python version - gcc dependency - Flake8 comment rules * Richer caveats and warnings. * Convert to CMakePackage and fix python version typo * Fix typo: noqab -> noqa * Ensure proper build location, clean up comments
2017-04-04Convert STREAM to MakefilePackage (#3692)Adam J. Stewart1-4/+2
2017-04-04Add fio package (#3689)Adam J. Stewart1-0/+56
2017-04-04intel-mkl: add 2017.2 (#3687)Denis Davydov1-15/+7
* intel-mkl: add 2017.2 * intel-mkl: add urls, update docstring
2017-04-04Update SymEngine package to enable build against LLVM (#3682)Jean-Paul Pelteret1-2/+7
2017-04-04Cppcheck (#3684)Mayeul d'Avezac1-1/+5
* Adds cppcheck version 1.72 * cppcheck installation requires cfg files Without these files, cppcheck does not work correctly
2017-04-04Update tinyxml (#3649)Mayeul d'Avezac1-1/+2
* Update tinyxml * url seems to have changed * spack replaces "_2_6_2" with "_2.6.2" unless the url is explicitly given * copyfile is no longuer available by default * URL version-parsing should work as of #2972
2017-04-03Add IOzone package (#3679)Adam J. Stewart1-0/+53
2017-04-03Overhaul Spack's URL parsing (#2972)Adam J. Stewart65-238/+154
* Remove fake URLs from Spack * Ignore long lines for URLs that start with ftp: * Preliminary changes to version regexes * New redesign of version regexes * Allow letters in version-only * Fix detection of versions that end in Final * Rearrange a few regexes and add examples * Add tests for common download repositories * Add test cases for common tarball naming schemes * Finalize version regexes * spack url test -> spack url summary * Clean up comments * Rearrange suffix checks * Use query strings for name detection * Remove no longer necessary url_for_version functions * Strip off extraneous information after package name * Add one more test * Dot in square brackets does not need to be escaped * Move renaming outside of parse_name_offset * Fix versions for a couple more packages * Fix flake8 and doc tests * Correctly parse Python, Lua, and Bio++ package names * Use effective URLs for mfem * Add checksummed version to mitos * Remove url_for_version from STAR-CCM+ package * Revert changes to version numbers with underscores and dashes * Fix name detection for tbb * Correctly parse Ruby gems * Reverted mfem back to shortened URLs. * Updated instructions for better security * Remove preferred=True from newest version * Add tests for new `spack url list` flags * Add tests for strip_name_suffixes * Add unit tests for version separators * Fix bugs related to parseable name but in parseable version * Remove dead code, update docstring * Ignore 'binary' at end of version string * Remove platform from version * Flip libedit version numbers * Re-support weird NCO alpha/beta versions * Rebase and remove one new fake URL * Add / to beginning of regex to avoid picking up similarly named packages * Ignore weird tar versions * Fix bug in url parse --spider when no versions found * Less strict version matching for spack versions * Don't rename Python packages * Be a little more selective, version must begin with a digit * Re-add fake URLs * Fix up several other packages * Ignore more file endings * Add parsing support for Miniconda * Update tab completion * XFAILS are now PASSES for 2 web tests
2017-04-03Add latest version of pkg-config (#3672)Adam J. Stewart1-16/+16
2017-04-03openfst conflicts with intel@16: and gcc@6: . (#3671)健美猫1-10/+5
2017-04-03Fix conflict directives for libpfm4. (#3673)健美猫1-1/+1
2017-04-03Add latest alpha release of MVAPICH2 (#3674)Adam J. Stewart1-1/+6
2017-04-03Add depends_on() new-ish bison (#3661)George Hartzell1-0/+1
* Add depends_on() new-ish bison * Refine dependency, only needed to build.
2017-04-03Add libpfm4 package. (#3667)健美猫1-0/+48
2017-04-03add CUDA_HOME arg to nccl makefile (#3666)Jeffrey Salmond1-0/+4
2017-04-03add gflags as dependency of glog (#3665)Jeffrey Salmond1-0/+2
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