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2024-02-28Upgrade TensorFlow Probability with newer versions (#42673)Jonas Eschle1-9/+40
* enh: add newer versions * enh: add newer versions * format * fix typo * Update package.py * make jax and TF optional dependencies * style fix * remove dependency * remove old TFP version * fix: style
2024-02-28ParaView Release Candidate 5.12.0-RC3 (#42654)kwryankrattiger1-1/+1
2024-02-28perl-json-xsand deps: new packages (#42904)Arne Becker3-0/+84
Adds JSON::XS and its deps: - Canary::Stability - Types::Serialiser
2024-02-28package_py_systemd_python_improve (#42865)Sinan1-0/+3
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-28Add package zfit interface (#42666)Jonas Eschle1-0/+29
* Add package zfit interface * add maintainer * [@spackbot] updating style on behalf of jonas-eschle * Update package.py * Update package.py * Update package.py * [@spackbot] updating style on behalf of jonas-eschle * Update var/spack/repos/builtin/packages/py-zfit-interface/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py --------- Co-authored-by: jonas-eschle <jonas-eschle@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-27C-Blosc2: Fuzzer Tests (#42881)Axel Huebl1-0/+1
The fuzzer tests are a bit flaky and have linker issues on clang. We generally only should build them in testing.
2024-02-27Adding dependency of roctracer-dev and patch in miopen-hip (#42637)renjithravindrankannath3-2/+47
2024-02-27openexr: Add custom libs property (#42274)Tom Payerle1-0/+11
Libraries for openexr are named libOpenEXR*.so, etc., so the default libs handler in spec does not find them. Add a custom libs property to address this. Partial fix for #42273 Co-authored-by: payerle <payerle@users.noreply.github.com>
2024-02-27regtools: add new package (#42852)George Young1-0/+22
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-27btop: add cmake version restriction (#42835)YI Zeping1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-27bazel: allow offline build of major versions 5 and 6 (#41575)Lydéric Debusschère1-6/+51
* bazel: allow offline build of major versions 5 and 6; add variant download_data * bazel: add maintainer LydDeb * bazel: install offline only; remove variant download_data * bazel: fix variable name: resource_dico --> resource_dictionary * bazel: fix style * bazel: fix the build of version 4 * bazel: add comment about resources * bazel: access to resource stages with self.stage * bazel: add except to solve AttributeError: 'Stage' object has no attribute 'resource' --------- Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2024-02-27delphes: use the same C++ standard as in ROOT (#42816)Juan Miguel Carceller1-12/+2
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27garfieldpp: Add version 5.0 (#42817)Juan Miguel Carceller1-0/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27Open MPI: adjust pmix dependency for 5.0.x (#42827)Howard Pritchard1-1/+1
for various reasons had to advance dependency of 5.0.2 to at least pmix 4.2.4. 5.0.1 and 5.0.0 can also build with 4.2.4 pmix or newer. related to #42651 Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-27openfoam: add mpfr search paths (#42779)AMD Toolchain Support1-0/+2
Co-authored-by: Branden Moore <branden.moore@amd.com>
2024-02-27eigenexa: add 2.7–2.12 (#38170)Eisuke Kawashima1-3/+24
2024-02-27gpuscout: new package (#42761)stepanvanecek1-0/+28
Co-authored-by: Stepan Vanecek <stepan@Stepans-MBP.fritz.box>
2024-02-27double-batched: add v0.5.0 (#42850)Carsten Uphoff1-0/+1
Signed-off-by: Carsten Uphoff <carsten.uphoff@intel.com>
2024-02-27dd4hep: new version 1.28 (#42846)Wouter Deconinck1-0/+1
2024-02-27root: add dependent package required for build time tests (#42849)Kensuke WATANABE1-0/+2
2024-02-27bdsim: use the same C++ standard as in ROOT, add a patch (#42031)Juan Miguel Carceller2-1/+23
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27picard: add version 3.1.1 (#42862)downloadico1-0/+5
2024-02-27rocm-gdb: add v6.0.2 (#42855)afzpatel1-2/+4
2024-02-26Update camp missing headers patch to be applied with all compilers (#42857)Mikael Simberg2-1/+1
2024-02-26py-find-libpython: 0.3.1 (#42853)Erik Heeren1-1/+3
* py-find-libpython: 0.3.1 * py-find-libpython: sort versions
2024-02-26ImageMagick: fewer dependencies on macOS (#42739)Adam J. Stewart1-2/+2
2024-02-26py-pyomo: add v6.7.1 (#42795)Miranda Mundt1-4/+14
* Update Pyomo spack package for 6.7.1 release * Apply changes from @adamjstewart * Update sphinx+Pyomo versions * Whoops - typo
2024-02-25Update PyTorch ecosystem (#42819)Adam J. Stewart4-98/+108
2024-02-25py-ipyvuetify: new package (#42836)Jeremy Fix1-0/+30
* py-ipyvuetify: new package * Limit py-jupyter-packing version to 0.7.x Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix py-jupyterlab version and type Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix py-ipyvue version range to exclude 2 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * rm py-wheel, already considered for PythonPackage * fix: pynpm only required for build, reorder dependencies as in the pyproject.toml --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-25snakemake: new version with plugins (#42713)Maciej Wójcik25-20/+653
* snakemake: add Snakemake 8 with dependencies * snakemake: add missing description * Whitespace * Whitespace * Whitespace * Whitespace * py-conda-inject: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-azure-batch: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-cluster-generic: add constraint for Python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake: add upper bound for Python * py-snakemake-executor-plugin-drmaa: specify dependency type Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-googlebatch: correct dependency version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-executor-plugin-tes: correct dependency version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-snakemake-storage-plugin-s3: reorder * snakemake: remove newly added variants * snakemake: remove newly added variants * snakemake: remove newly added variant * snakemake: update version * snakemake: update version * snakemake: whitespace * py-snakemake-storage-plugin-s3: update version * snakemake: use newer version * snakemake: whitespace * snakemake: update interfaces * py-snakemake-storage-plugin-gcs: link issue * snakemake: update versions --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-24[laghos] Add a patch for MPI_Session (#42841)Veselin Dobrev1-0/+7
2024-02-24zoxide: new package (#42840)Pranav Sivaraman1-0/+22
* feat: zoxide package * Apply suggestions from code review Co-authored-by: Alec Scott <alec@bcs.sh> --------- Co-authored-by: Alec Scott <alec@bcs.sh>
2024-02-24py-lightly: add v1.5.0 (#42820)Adam J. Stewart1-0/+1
2024-02-24py-pandas: add v2.2.1 (#42838)Adam J. Stewart1-0/+1
2024-02-24py-azure-...: add new versions (#42742)Maciej Wójcik4-34/+68
* py-azure-core: add new versions * py-azure-identity: add new versions, flatten dependencies * py-azure-storage-blob: add new versions * py-msal: add new versions * py-azure-...: black is terrible * py-azure-storage-blob: correct dependency * Reorder * Reorder
2024-02-24package/libspatialite: add conflict, new version (#42573)Sinan1-21/+19
* package/libspatialite: add conflict, new version * depends on new version of freexl * fix bug * remove manual download stuff * improve style * first depracate * [@spackbot] updating style on behalf of Sinan81 * get rid of conflict, reorder deps * remove manual download --------- Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2024-02-24libEnsemble: add v1.2.1 (#42828)Stephen Hudson1-1/+2
2024-02-24Allow awscli-v2 to be installed without examples/ dir (#42773)Alex Richert1-0/+8
* Allow awscli-v2 to be installed without examples/ dir * [@spackbot] updating style on behalf of AlexanderRichert-NOAA * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23libjpeg-turbo: add v2.1.5, update recipe (#37963)Alex Richert1-5/+17
Co-authored-by: Alec Scott <hi@alecbcs.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-23netcdf-cxx4: convert to CMake-based build (#42766)Chris Marsh1-86/+32
The CMake-based build is anticipated to work in all cases where the Autotools-based build did, and to address all prior issues with less maintenance of the package. In detail: * Fixes #42735 (CMake's find_package helps with linking to proper netcdf-c) * Replaces older Autotools-based build * All preexisting variants are handled * Record hdf5 as an explicit dependency (was missing before) * Add +tests option Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-02-23proj: apply stdint.h patch in version 8 (#42791)Vicente Bolea1-1/+1
* proj: apply stdint.h patch in version 8 * Update var/spack/repos/builtin/packages/proj/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23Windows path handling: change representation for paths with spaces (#42754)John W. Parent2-2/+10
Some builds on Windows break when encountering paths with spaces. This reencodes some paths in Windows 8.3 filename format (when on Windows): this serves as an equivalent identifier for the file, but in a form that does not have spaces. 8.3 filenames are also truncated in length, which could be helpful, but that is not the primary intended purpose of using this format. Overall * nmake/msbuild packages do this generally for the install prefix * curl/perl require additional modifications (as written now, each package may require calls to `windows_sfn` to work when the Spack root/install/staging prefixes contain spaces) Some items for follow-up: * Spack itself does not create paths with spaces "on top" of whatever the user configures or where it is placed (e.g. the Spack root, the staging directory, etc.), so it might be possible to edit some of these paths once and avoid a proliferation of individual `windows_sfn` calls in individual packages. * This approach may result in the insertion of 8.3-style paths into build artifacts (on Windows), handling this may require additional bookkeeping (e.g. when relocating).
2024-02-23vtk package: support vtk@9 on Windows (#42751)John W. Parent3-0/+42
2024-02-23tiled-mm: add v2.3 (#42829)Simon Pintarelli1-0/+2
2024-02-23Update/add packages in the Nextflow ecosystem (#42776)Dr Marco Claudio De La Pierre4-0/+125
Signed-off-by: Dr Marco Claudio De La Pierre <marco.delapierre@gmail.com>
2024-02-23geant4: new version v11.2.1 (#42822)Ben Morgan1-0/+1
2024-02-23py-jwcrypto: new package (#42783)Jeremy Fix1-0/+31
* adds the spack recipe for py-jwcrypto * split long line to fix E501 * Specify versions for py-cryptography and py-typing-extensions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23py-reacton: new package (#42794)Jeremy Fix1-0/+28
* adds the spack recipe for reacton python package * Fix versions for ipywidgets and typing-extensions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23py-find-libpython: new package (#42804)Erik Heeren1-0/+20
* py-find-libpython: new package * Update var/spack/repos/builtin/packages/py-find-libpython/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23py-ipyvue: new package (#42789)Jeremy Fix1-0/+25
* add spack recipe for ipyvue * Specify version for ipywidgets Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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