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2020-01-04add new package : tajo (#14314)darmac1-0/+36
* add new package : tajo * refine list_depth for tajo
2020-01-03py-intervaltree: new package at 3.0.2 (#14277)Justin S1-0/+19
* py-intervaltree: new package at 3.0.2 * py-intervaltree: fix checksum * py-intervaltree: add py-setuptools dep * py-intervaltree: use inclusive ranges * py-intervaltree: change py-test dep type
2020-01-03petsc: add version 3.12.3 (#14374)Satish Balay1-0/+1
2020-01-03new package: bref3 (#14256)xfzhao2-0/+50
2020-01-02Get py-numpy > 1.16 to build with Intel compiler (#14360)Glenn Johnson1-0/+23
Beginning with numpy > 1.16 when using older versions of gcc the `std=c99` flag must be used. The Intel compiler depends on gcc for its language extensions so the version of gcc is important. If the version of gcc used by the Intel compiler is one that requires the `-std=c99` flag then that flag will have to be used for a build with the Intel compiler as well. This PR tests the version of gcc used by the Intel compiler and will abort the build if the gcc version is < 4.8 and inject the `-std=c99` flag if >= 4.8 and < 5.1. This will cover the system gcc compiler and any gcc environment module loaded at build time.
2020-01-02package/opencv fix mistake in conflict statement involving gcc (#13959)Sinan1-4/+1
* fix mistake in conflict * extend CudaPackage to resolve cuda-gcc conflicts
2020-01-02Updated version to include v3.0.1 (#14353)Jonathan R. Madsen1-0/+2
* Updated version to include v3.0.1 - this patch has a rather critical MT fix * Update package.py - Moved 3.0.1 above 3.0.0
2020-01-02fix url for mantevo packages (#14366)Christoph Junghans9-9/+9
2020-01-02Set preferred version of perl-bioperl (#14354)Glenn Johnson1-1/+3
Due to formatting differences, the older version of perl-bioperl was getting picked up as the preferred version. This PR explicitly sets the newer version to be preferred.
2020-01-02added verbose variant to mercury package (#14355)Matthieu Dorier1-0/+3
2020-01-02gromacs: depend on hwloc v1 (#14343)Gilles Gouaillardet1-1/+3
Because of a bug in the current concretizer, spack install gromacs fails because gromacs depends on hwloc (default is v2), and Open MPI (the default MPI library) depends on hwloc v1. As discussed in https://github.com/spack/spack/issues/14339, this workaround should be removed once the concretizer is fixed Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-01-02py-scikit-learn: add 0.22.1 (#14350)Adam J. Stewart1-0/+1
2020-01-02osu-micro-benchmarks: added version 5.6.2 (#14352)Mike Kiernan1-1/+2
2020-01-02new package: py-zarr (#14326)Sinan1-0/+25
* create package py-zarr * specify setuptools versions * add more dependencies, improve style * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * add dependencies, remove python version constraint * remove windows specific dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-02MKL: set appropriate CMake env vars (#14274)Adam J. Stewart1-5/+0
2020-01-01new package: py-numcodecs (#14330)Sinan1-0/+25
* new package: py-numcodecs * make msgpack variant
2020-01-01py-numpy: add 1.17.5 (#14341)Adam J. Stewart1-0/+1
2019-12-31new package: py-msgpack (#14329)Sinan1-0/+17
* new package: py-msgpack * remove python dependency * remove cython dependency
2019-12-31Updated versions and more variants (#14310)Jonathan R. Madsen1-4/+43
* Updated versions and more variants - Added 'develop' and '3.0.0' versions - Added 'tau', 'upcxx', 'gotcha', and 'likwid' * Added conflict handling for +cupti~cuda * Removed extra cmake args line
2019-12-31add new package : libfastcommon (#14303)darmac1-0/+31
* add new package : libfastcommon * update libfastcommon install()
2019-12-31add new package : moosefs (#14305)darmac1-0/+24
* add new package : moosefs * remove no-need depens : zlib
2019-12-31add new package : opentsdb (#14317)darmac1-0/+33
* add new package : opentsdb * remove redundant url_for_version()
2019-12-31New package - zziplib (#14318)Glenn Johnson2-0/+743
This PR adds the zziplib package.
2019-12-31new package: py-asciitree (#14327)Sinan1-0/+17
* new package: py-asciitree * fix typo
2019-12-31Add OpenFOAM 1912 (#14322)Mark Olesen1-0/+1
2019-12-30copyright: update copyright dates for 2020 (#14328)Todd Gamblin3902-3903/+3903
2019-12-29Add py-numpy 1.16.6 (#14313)Adam J. Stewart1-0/+1
2019-12-29Add support for graphite2 support to harfbuzz (#14300)Glenn Johnson1-0/+5
This PR adds graphite2 support to harfbuzz. This PR depends on PR #14299, which added the graphite2 package to spack.
2019-12-28add new package : jafka (#14304)darmac1-0/+29
2019-12-28New package - TECkit (#14301)Glenn Johnson1-0/+29
This PR adds the teckit package to spack.
2019-12-28New package - graphite2 (#14299)Glenn Johnson1-0/+18
* New package - graphite2 This PR adds the Graphite2 package to Spack. * Replace smart quotes with standard quotes
2019-12-27New package - libpaper (#14302)Glenn Johnson1-0/+22
This PR adds the paper library to spack.
2019-12-27added build dependences required after cairo package change (#14297)Gregory Lee1-1/+1
* added build dependences required after cairo package change * fixed pango build dependencies
2019-12-26patch cairo build files for build without fontconfig fixes #14112 (#14296)Gregory Lee2-0/+49
* patch cairo build files for build without fontconfig * added build dependencies for cairo
2019-12-26Add Avizo Recipe (#12792)asmaahassan901-0/+52
* Add Avizo Recipe * make changes as per review * fix home url and linting * Fix url * fix identation * change checksum to sha256 instead of md5 * fix installation * fix lint * fix identation * make it compatible with python 2.6 * enhancing recipe and fixing avizo licensing changes as per suggestions from reviewer; fix licensing * fix identation * use new setup_run_environment function
2019-12-26aspa: Fix common errors. (#14295)t-karatsu2-0/+61
* aspa: Fix common errors. * defined new member 'Vec_value_type' in 'self' namespace. * fix narrowing error. * fix patch about typecast.
2019-12-24intel-pin: add version 3.11 (#14292)Matthias Diener1-0/+1
2019-12-24cmake: add version 3.16.2 (#14291)Matthias Diener1-0/+1
2019-12-24scons: add version 3.1.2 (#14290)Matthias Diener1-0/+1
2019-12-24Bump nektar to 5.0.0. (#14288)健美猞猁1-0/+1
2019-12-23added master branch version to mpip (#14284)Gregory Lee1-0/+2
2019-12-23gromacs: add v2019.5 (#14285)Christoph Junghans1-0/+1
2019-12-23Added conflict with %pgi in libpciaccess package.py with relevant links in ↵Nicholas Sly1-0/+9
comments. (#14281)
2019-12-23netlib-scalapack: Add int overflow patch (#14276)Piotr Luszczek2-0/+315
2019-12-22Add py-boto3 1.10.44 (#14271)Adam J. Stewart1-1/+3
2019-12-22add new package : libdap4 (#14267)Timo Heister1-0/+40
2019-12-22Add py-numpy 1.18.0 (#14269)Adam J. Stewart1-2/+6
2019-12-22Add awscli 1.16.308 (#14270)Adam J. Stewart1-10/+10
2019-12-22Add py-botocore 1.13.44 (#14272)Adam J. Stewart1-2/+3
2019-12-22Add new release and remove extraneous patches (#14273)Piotr Luszczek1-2/+3
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