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2022-05-25py-numpy: add v1.22.4 (#30827)Adam J. Stewart2-1/+4
2022-05-25py-pythran: add v0.11.0 (#30829)Adam J. Stewart1-0/+4
2022-05-25openmpi: fixes for slurm and #29449 (#30299)Seth R. Johnson1-44/+19
2022-05-25Add nextflow 22.04.3 (#30855)Diego Alvarez1-0/+1
2022-05-25eagle: updating to version 1.1.3 (#30852)snehring1-3/+4
2022-05-25sed: fix recursive symlink (#30849)Seth R. Johnson1-0/+3
Use `spack build` as build dir to avoid recursive link error. ``` config.status: linking /var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-sed-4.8-wraqsot6ofzvr3vrgusx4mj4mya5xfux/spack-src/GNUmakefile to GNUmakefile config.status: executing depfiles commands config.status: executing po-directories commands config.status: creating po/POTFILES config.status: creating po/Makefile ==> sed: Executing phase: 'build' ==> [2022-05-25-14:15:51.310333] 'make' '-j8' 'V=1' make: GNUmakefile: Too many levels of symbolic links make: stat: GNUmakefile: Too many levels of symbolic links make: *** No rule to make target `GNUmakefile'. Stop. ```
2022-05-25py-scikit-learn: add v1.1.1 (#30830)Adam J. Stewart1-0/+1
2022-05-25Pastix: new package (#30533)fpruvost1-0/+88
2022-05-25[mochi-margo] added version 0.9.10 (#30844)Matthieu Dorier1-0/+1
2022-05-25geant4: new version v11.0.2 (#30847)Ben Morgan1-0/+1
2022-05-25ccache: add missing pkgconfig dep (#30846)Harmen Stoppels1-3/+5
2022-05-25py-scipy: add v1.8.1 (#30831)Adam J. Stewart1-1/+2
2022-05-25reprimand: update homepage (#30840)Erik Schnetter1-1/+1
2022-05-25p7zip: fix %clang (#30843)Harmen Stoppels1-5/+16
2022-05-25dsfmt: set CC=cc (#30842)Harmen Stoppels1-1/+1
2022-05-25tau: add v2.31.1 (#30820)eugeneswalker1-0/+1
2022-05-25julia: support clang, set llvm NDEBUG correctly (#30800)Harmen Stoppels3-0/+64
2022-05-25mbedtls: add conflicts over inline asm trouble with clang@12: (#30801)Harmen Stoppels1-0/+4
2022-05-25[lcms] Added version 2.13.1 and URL version (#30811)Jen Herting1-0/+5
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-25py-pillow-simd: mark conflicts with aarch64 (#30828)Adam J. Stewart1-0/+2
2022-05-24silo: Fix HDF5 1.13 API breakage (#30786)Chuck Atkins2-2/+44
2022-05-24Add aria2 1.36.0 (#30822)Derek Ryan Strong1-1/+2
2022-05-25Add rsync 3.2.4 (#30821)Derek Ryan Strong1-1/+2
2022-05-24[leveldb] add patch to fix check for -Wthread-safety (#30810)Matthieu Dorier2-0/+27
2022-05-24[libwebp] Added version 1.2.2 (#30814)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24[libdeflate] Added version 1.10 (#30813)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24[libaec] Added version 1.0.6 (#30812)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24Allow Kokkos with OpenMPTarget backend (#30724)Daniel Arndt1-0/+9
* Allow Kokkos with OpenMPTarget backend * Restrict SYCL and OpenMPTarget to C++17 or higher * Improve C++ standard check for SYCL and OpenMPTarget * Fix indentation
2022-05-24mpich: re-enable building of the older versions (#30766)Sergey Kosukhin1-1/+7
* mpich: enable building @3.4:3.4.3 ~cuda * mpich: add dependency on mxm
2022-05-24tbl2asn: adding currently available version (#30774)snehring1-6/+9
2022-05-24Best effort co-concretization (iterative algorithm) (#28941)Massimiliano Culpo1-1/+1
Currently, environments can either be concretized fully together or fully separately. This works well for users who create environments for interoperable software and can use `concretizer:unify:true`. It does not allow environments with conflicting software to be concretized for maximal interoperability. The primary use-case for this is facilities providing system software. Facilities provide multiple MPI implementations, but all software built against a given MPI ought to be interoperable. This PR adds a concretization option `concretizer:unify:when_possible`. When this option is used, Spack will concretize specs in the environment separately, but will optimize for minimal differences in overlapping packages. * Add a level of indirection to root specs This commit introduce the "literal" atom, which comes with a few different "arities". The unary "literal" contains an integer that id the ID of a spec literal. Other "literals" contain information on the requests made by literal ID. For instance zlib@1.2.11 generates the following facts: literal(0,"root","zlib"). literal(0,"node","zlib"). literal(0,"node_version_satisfies","zlib","1.2.11"). This should help with solving large environments "together where possible" since later literals can be now solved together in batches. * Add a mechanism to relax the number of literals being solved * Modify spack solve to display the new criteria Since the new criteria is above all the build criteria, we need to modify the way we display the output. Originally done by Greg in #27964 and cherry-picked to this branch by the co-author of the commit. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Inject reusable specs into the solve Instead of coupling the PyclingoDriver() object with spack.config, inject the concrete specs that can be reused. A method level function takes care of reading from the store and the buildcache. * spack solve: show output of multi-rounds * add tests for best-effort coconcretization * Enforce having at least a literal being solved Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-05-24New package: py-x21 (#30225)Jen Herting1-0/+66
* Py-x21 now works, needs dependencies Conflicts: var/spack/repos/rit-rc/packages/py-x21/package.py * Added dependencies to py-x21 * Making flake style check happy * [py-x21] flake8 * [py-x21] - added homepage - added placeholder description - added comment about checksums * [py-x21] added darwin support and fixed issue with python 3.7 wheel name * [py-x21] adding checksum hash * [py-x21] removed duplicate py-pynacl * [py-x21] - updated description - updated version listing to have a different version for each version of python. Also, versions dependent on sys.platform - updated url_for_version to not require post concretized information so that spack checksum works * [py-x21] isort Co-authored-by: vehrc <vehrc@rit.edu>
2022-05-24apptainer: new package (#30745)Matthias Wolf3-14/+77
2022-05-24vdt: add preload variant (#30030)iarspider1-0/+5
2022-05-24libfabric has needed rdma-core for efa since 1.10.0 (#30798)Evan Bollig1-0/+1
2022-05-24petsc: update rocrand location wrt rocm@5.1.0 (#30790)Satish Balay1-1/+5
rocm-5.1.0 removed librocrand.so from ROCM_DIR/rocrand/lib location (but includes are still at this location) /opt/rocm-5.0.2/lib/librocrand.so /opt/rocm-5.0.2/rocrand/lib/librocrand.so /opt/rocm-5.1.0/lib/librocrand.so drwxr-xr-x 2 root root 617 Mar 8 08:20 /opt/rocm-5.0.2/rocrand/include drwxr-xr-x 2 root root 617 Mar 31 09:48 /opt/rocm-5.1.0/rocrand/include
2022-05-24su2: add v7.3.1 (#30794)Mr-Timn1-0/+3
2022-05-24trilinos: add adelus, aprepro and teuchos variants (#28935)Paul Wolfenbarger1-0/+4
2022-05-24gplates: add v2.3.0 (#30676)Adam J. Stewart1-30/+38
2022-05-23Revert "Added cloud_pipline for E4S on Amazon Linux (#29522)" (#30796)Scott Wittenburg1-7/+6
This reverts commit 07e9c0695af09bbf5d1ebe51bb6f2b34eb88a3df.
2022-05-23Bugfix hwloc find cuda (#30788)Brian Van Essen1-0/+10
* Added autotools configure flags to ensure that hwloc finds the correct version of CUDA that it was concretized against, rather than the first one that package config finds. * Added support for finding the correct version of ROCm libraries. Fixed Flake8. * Fixed guard on finding ROCm library
2022-05-23[py-h2] added version 3.2.0 and 4.1.0 (#29804)Jen Herting1-4/+9
* [py-h2] py-wheel is implied by PythonPackage * [py-h2] python dependencies should be type=('build', 'run') * [py-h2] fixed dependencies for py-h2@4.0.0 * [py-h2] added version 3.2.0 * [py-h2] added version 4.1.0 * [py-h2] Older version requires py-enum34 for older versions of python
2022-05-23Added cloud_pipline for E4S on Amazon Linux (#29522)Evan Bollig1-6/+7
Add two new cloud pipelines for E4S on Amazon Linux, include arm and x86 (v3 + v4) stacks. Notes: - Updated mpark-variant to remove conflict that no longer exists in Amazon Linux - Which command on Amazon Linux prefixes on all results when padded_length is too high. In this case, padded_length<=503 works as expected. Chose conservative length of 384.
2022-05-23usearch: adding in new version, updating checksums (#30776)snehring1-4/+6
2022-05-23genemark-et: updating to 4.69 (#30793)snehring1-0/+1
2022-05-23plumed: add versions up to v2.8.0 (#30787)Maciej Wójcik2-21/+42
2022-05-23abseil-cpp: add v20211102 (#30785)marcus-elia1-1/+2
2022-05-23xsdk-examples: add v0.3.0 (#30770)Cody Balos3-30/+89
Co-authored-by: Satish Balay <balay@mcs.anl.gov> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-05-23py-rnc2rng: fix 2.6.5 and add 2.6.6 (#30784)Manuela Kuhn1-0/+3
2022-05-23hdf5-vol-async: update new version, tests, and runtime envs (#30713)Jean Luca Bez1-5/+21
* Update h5bench maintainers and versions * Include version 1.1 for h5bench * Correct release hash and set default version * Update .tar.gz version * Include new version and update runtime * Update year * Update package.py * Update package.py