Age | Commit message (Collapse) | Author | Files | Lines |
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closes #5506
The application of patches to upstream executables has been reworked
according to the suggestions of the main developer in #5506. In
particular we are not maintaining a dictionary that maps plumed
versions to the versions of patchable executables, and we are using a
non-interactive command to patch applications.
All the comments on substituting plumed at run-time do not apply here,
since we use RPATH and we want to maintain a 1:1 relationship between
the DAG hash and the plumed library used.
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* r-adsplit: Create new package.
* r-rlang: Update version.
* r-s4vectors: Update version.
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* Add package for strelka@2.8.2
* Fix flake8 complaints
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* Add package for aspell and ass't dictionaries
Add a package definition for aspell.
Add a handful of dictionaries to convince myself that the support for
a bunch of dictionaries works.
* Flake8 cleanup
* Use six's version of urlparse
`urlparse` is not python3 friendly. This works around it (stolen from
`.../cmd/md5.py`).
* Fix incorrect trimming regexp
* Clean up dictionary build
- more parsimonious use of `which` (`make()` has already been made)
- use `sh` instead of `bash`
* Use a helper method to generate info for variants
I figured out my issues with static methods. I *think* that it this
is pythonic.
* Convert aspell to an extendable package
Convert aspell to be extendable and rework the dictionaries to be
extensions.
As it stands, there's a great deal of cut and paste in the
dictionaries, I'll abstract that out next.
The {de,}activate methods copy a great deal of code out of
package.py. Perhaps there's a better way....
* Create AspellDictPackage and use it for the dictionaries
Reduce the repeated code, pull it into a base class.
I'm confused about why 'from spack import *' wasn't more useful in the
base class.
* Oops, -de & -es should be AspellDictPackages too
* Typo: pakcage -> package
* Address some commentary
* Update copyright dates, 2016->2017
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Requires nghttp2 libraries
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This adds QMCPACK along with patches to Quantum Espresso for using Quantum Espresso in QMCPACK workflows.
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* nghttp2 library package
Added for dependencies
* Update package.py
* Removed useless code
* Flake8 fix
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This is a simple package that drops their shell wrapper into
prefix.bin and their jar files into prefix.lib.
The approach comes from the picard package.
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* Updating ag to the latest version
* Pretty by request
* Restore url to previous value
There *is* an https version available, but I've also been told
to not just update the url when adding new version. I'm following
the latter advice and trusting security to the digest.
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* git: setup_dependent_environment won't fail for external packages
* luafilesystem: relax the request on git (it seemed overly restrictive)
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* Adding maven v3.5.0
Updating package file to include later version of maven but still signifying a preference for the older
* removing specific preference flag
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* ncl: Fix temp directory
Currently, ncl is configured using a transient temp directory. This
leads to warnings such as this when executing ncl later on:
warning:"/tmp/ncl_ncar_xxxxxx" tmp dir does not exist or is not writable:
NCL functionality may be limited -- check TMPDIR environment variable
As this also breaks some functionality, use the system temp directory
instead (typically /tmp).
* ncl: Depend on esmf
esmf is required for some ncl scripts (such as ESMF_regridding.ncl).
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(#5624)
* Add link dependency on xproto to xau
The libxcb build was failing like so:
```
1 error found in build log:
[ ... ]
131 checking whether to build developer documentation... yes
132 checking for doxygen... /usr/bin/doxygen
133 checking for dot... /usr/bin/dot
134 checking for CHECK... no
135 checking for XCBPROTO... yes
136 checking for NEEDED... no
>> 137 configure: error: Package requirements (pthread-stubs xau >= 0.99.2) were not met:
138
139 Package 'xproto', required by 'xau', not found
140
141 Consider adjusting the PKG_CONFIG_PATH environment variable if you
142 installed software in a non-standard prefix.
143
```
This adds a link dependency on libxproto that allows the libxcb build to
succeed.
* Change more build deps to build, link
These were also necessary for emacs+X to build.
* Fix flake8 complaint
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* edits to address issues where spack concretization attempts to set properties on already-installed specs
* most added checks only need to check if the spec is concrete; they dont also need to check if the package is installed
* add test to ensure that patches are not applied to an installed spec
* add test to ensure that an error is detected when a dependent requests a dependency constraint which conflicts with a requested installed dependency
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- Use libs instead of lapack_libs (see #3364).
- Add a patch to fix building with recent versions of gcc.
- Add a patch to fix building with mvapich2.
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Adds the latest release of CMake.
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Tests fail locally because the install prefix doesn't exist. Make them
exist.
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* pr-quantities: add version & py-numpy conflict (#5307)
* r-tibble: Update version to 1.3.4
* r-tibble: added dependency r-rlang
* r-tibble: changed r-lazyeval and r-rlang to be versioned dependencies
* Update package.py
* Update package.py
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The main location only carries the latest release, while all previous
(and current) ones are available at the archive location.
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Fix missing `-lz` on `make` of OpenSSL.
Spotted on a system without a system-wide zlib installation.
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* Add package for multitail@6.4.2
Lightly tested on CentOS 7.
* Responde to feedback/comments
Use `install_targets` to specify PREFIX= and DESTDIR= instead of
hacking away at the Makefile. Expand commentary about "Why?".
Use `headers.include_flags` and `libs.ld_flags` to avoid explicitly
setting `-L` and `-I` when hacking away at the Makefile.
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