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2023-08-28Patch VTK to enable python 3.8 in VTK 8.2 (#38735)kwryankrattiger9-9/+363
* VTK: Add patch for python 3.8 support * CI: Re-enable VisIt in CI * Configure spec matrix for stack with VisIt * Add pugixml dep for 8.2.0 * Make VTK and ParaView consistent on proj dep * OpenMPI 3: provides MP support by default * Add details on proj dep in ParaView * Add python 3.8 to test mock repo * Patches to get VisIt VTK interface * CI: Disable VisIt with GUI in DAV
2023-08-28singularityce: arg handling fix (#39663)Brian Vanderwende1-2/+2
2023-08-28kokkos: avoid setting multiple `cuda_arch` (#38723)Loris Ercole1-5/+21
The kokkos package does not support building with cuda with multiple `cuda_arch`. An error is raised if multiple `cuda_arch` are specified.
2023-08-28mapl: add 2.40, deprecate old versions (#39615)Matthew Thompson1-21/+74
* Add MAPL 2.40, deprecated old versions * Undo some variant changes * style fixes * Make variants reflect Cmake options * Remove pnetcdf variant * Clean up depends_on
2023-08-28octopus: specify the scalapack library not the directory (#39109)Ashwin Kumar Karnad1-2/+2
* octopus: specify the scalapack library not the directory * octopus: use spec.scalapack.libs.ld_flags
2023-08-28GnuPG: add v2.4.3 (#39654)Massimiliano Culpo3-0/+3
Also updates a few dependencies
2023-08-28Fix a few issues with git versions / moving targets in packages (#39635)Harmen Stoppels8-7/+12
2023-08-28py-scikit-optimize: add v0.9.0 and move gptune patch (#38738)Jen Herting3-7/+9
Co-authored-by: liuyangzhuan <liuyangzhuan@gmail.com>
2023-08-28libarchive: use openssl by default (#39640)Harmen Stoppels1-1/+1
2023-08-28magma: add v2.7.2 (#39645)Stan Tomov1-0/+1
2023-08-28libarchive: new versions (#39646)Harmen Stoppels1-0/+2
2023-08-28libuv: add versions up to v1.46.0 (#39647)Harmen Stoppels1-0/+5
2023-08-27py-igraph: new package with version 0.10.6 (#39179)Christopher Christofi2-1/+64
2023-08-27llvm: ensure runtimes set rpaths (#39641)Nichols A. Romero1-1/+8
Ensure that CMAKE_INSTALL_RPATH_USE_LINK_PATH is propagated to sub-make when building runtimes.
2023-08-26CMake: add versions 3.26.4|5 and 3.27.* (#39628)John W. Parent1-0/+10
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-26py-scipy: re-apply scipy/scipy#14935 workaround (#39555)Daryl W. Grunau1-3/+2
* re-apply scipy/scipy#14935 workaround * restrict to %intel and eliminate Version() check --------- Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2023-08-26py-dask: use py-jinja2 versions from 2.10.3 (#39631)LydDeb1-1/+1
In depends_on py-jinja2, use versions from 2.10.3, instead of strict equality, according to the pyproject.toml of dask 2023.4.1
2023-08-26Update package.py (#39619)Tim Gymnich1-1/+3
2023-08-25llvm: fix `+lldb` optional deps and add `lua` variant (#39579)Nichols A. Romero1-8/+28
* llvm: fix +lldb optional deps, add lua variant * use good old conflicts --------- Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-25Add gperftools 2.12 (#39623)Mikael Simberg1-0/+1
2023-08-25QMCPACK: add v3.17.1 (#39626)Paul R. C. Kent1-0/+1
2023-08-25LBANN package: strip hostname on non-LC systems. (#39601)Brian Van Essen1-3/+2
2023-08-25add memalign option to petsc to be used with tandem (#37282)Thomas-Ulrich2-2/+13
2023-08-25intel-oneapi-mkl: add hpcx-mpi to the list of supported MPI libs (#39625)Loris Ercole1-3/+5
Co-authored-by: Loris Ercole <a-lercole@microsoft.com>
2023-08-25py-scipy: add v1.11.2 (#39515)Adam J. Stewart1-0/+1
2023-08-25arrow: explicitly disable RE2 and UTF8PROC flags when not in dependencies ↵Erik Heeren1-0/+5
(#35353) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-08-25legion: drop cray-pmi dependency (#39620)Richard Berger1-1/+0
There are other ways to enforce cray-pmi being loaded in environments that use cray-mpich. This avoids breaking environments where this was already the case and avoids forcing them to declare an external.
2023-08-24py-sphinx: add v7.2.3 (#39612)Adam J. Stewart2-3/+20
2023-08-24legion: depend on cray-pmi when using gasnet and cray-mpich (#39614)Richard Berger1-1/+1
2023-08-24phist: new version 1.12.0 (#39616)Jonas Thies1-0/+6
2023-08-24AOCL spack recipes for 4.1 release w. new AOCL-Utils library (#39489)AMD Toolchain Support8-66/+259
* AOCC and AOCL spack recipes for 4.1 release * Fix broken checksum * remove blank line * Add missing `@when` for 4.1 only function --------- Co-authored-by: vijay kallesh <Vijay-teekinavar.Kallesh@amd.com>
2023-08-24[py-smartsim] New Package (#39306)Matt Drozt3-0/+132
* Create a smartsim package * rm ss 0.4.2 * no py upper bound, add build dep * add setup_build_env * add comment to find ml deps lower bounds * Apply suggestions from code review Correct dep versions, use `python_purelib` Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove the cuda/rocm vars * point editors to bin deps version constraints * Apply suggestions from code review Loosen `py-smartredis` constraint, enforce `setup.cfg` py version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * style * rm rai lower bound * lower bound setuptools Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-24py-particle: new versions through 0.23.0 (#39547)Wouter Deconinck1-0/+4
* py-particle: new versions through 0.23.0 * py-particle: depends_on py-deprecated
2023-08-24preCICE: prepare for version 3 (#39486)Frédéric Simonis1-33/+54
2023-08-24py-sphinx: add v7.2 (#39513)Adam J. Stewart1-0/+6
2023-08-24add magma variant to strumpack (#39224)Sajid Ali1-0/+5
* add magma variant to strumpack * clarify conflicts to be excuive to rocm/cuda, without it +magma+cuda fails as it is ~rocm modified: var/spack/repos/builtin/packages/strumpack/package.py * add missing depends_on for magma variant
2023-08-24zlib-ng: build system patches (#39559)Harmen Stoppels4-1/+871
2023-08-24h5bench: add e4s tag (#39595)eugeneswalker1-0/+2
2023-08-24fms: add v2023.02 and v2023.01.01 (#39434)Ryan Mulhall1-0/+11
* Add 2023.02 and 2023.01.01 with variant for mpp_io and fms_io deprecation Co-authored-by: rem1776 <Ryan.Mulhall@noaa.gov>
2023-08-24perl-http-message: add dependency on perl-clone (#39567)Alan Orth1-0/+1
Clone is a hard dependency as of HTTP-Message v6.44. This causes problems in packages like Roary which depend on perl-http-message: $ spack load roary $ roary Use of uninitialized value in require at /var/scratch/spack/opt/spack/linux-centos8-x86_64_v3/gcc-8.5.0/perl-http-message-6.44-lzp5th4jddd3gojkjfli4hljgem2nl26/lib/perl5/HTTP/Headers.pm line 8. Can't locate Clone.pm in @INC (you may need to install the Clone module) (@INC contains: /home/aorth/lib ... See: https://github.com/libwww-perl/HTTP-Message/blob/master/Changes
2023-08-24Add package mpi-test-suite (#39487)Julien Cortial2-0/+45
2023-08-24ffmpeg: apply upstream fix for build with binutils 2.41 (#39392)Martin Aumüller1-0/+7
While spack does not yet provide binutils 2.41, they might still be installed. However, building ffmpeg on x86_64 fails with multiple errors like this: ./libavcodec/x86/mathops.h:125: Error: operand type mismatch for `shr' also reported here: https://trac.ffmpeg.org/ticket/10405
2023-08-24Make lcov dependency on perl explicit (#39485)Julien Cortial1-1/+8
2023-08-24Arbor: version added: v0.9.0 (#39374)Brent Huisman1-9/+21
2023-08-24lammps: simplify url_for_version logic (#39554)Richard Berger1-31/+23
Use the stable_versions variable to check stable versions
2023-08-23slurm: add version 23-02-3-1 and 23-02-4-1 (#39598)Richard Berger1-0/+2
2023-08-23Add amg2023 package; remove amg package (#39105)Greg Becker4-85/+102
Add amg2023 package Consolidate existing amg and amg2013 packages (they reference the same code) under the amg2013 name to minimize confusion between amg2023 and amg2013. Co-authored-by: Riyaz Haque <haque1@llnl.gov>
2023-08-23Include t8code package (#39391)svengoldberg1-0/+75
* t8code: Create new spack package Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2023-08-23adios2: correct c-blosc dependency (#39385)Vicente Bolea2-1/+4
* adios2: correct c-blosc dependency * c-blosc2: disable oneapi spec
2023-08-23cfitsio: add new version 4.3.0 (#39588)lorddavidiii1-0/+1
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