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Renaming mkl to intel-mkl
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* various python package version and dependency updates
* various python package version and dependency updates
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* espressopp: package for the ESPResSo++ software
This commit adds a package for the ESPResSo++
simulation software.
* Move Espressopp package to CMakePackage
This commit moves Espressopp package to CMakePackage.
Addresses some comments in the PR.
* Remove run_tests and changed type of dependencies
Addressed some comments from @adamjstewart.
Removed global run_tests setting and removed type from many
dependencies. Set type for py-mpi4py to 'nolink'.
* Updated to last version and fix mpi4py dependency
Added latest espressopp version and changed mpi4py (version) dependency for
different espressopp versions.
* Changed mpi4py version requirements for espressopp
Changed py-mpi4py version requirements for espressopp@1.9.4 according
to the package build requirements for that version.
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This adds the following packages:
py-backports-shutil-get-terminal-size py-nbformat
py-backports-ssl-match-hostname py-pathlib2
py-entrypoints py-pickleshare
py-futures py-pip
py-ipykernel py-prompt-toolkit
py-ipython-genutils py-ptyprocess
py-ipywidgets py-simplegeneric
py-jupyter-client py-singledispatch
py-jupyter-console py-terminado
py-jupyter-core py-traitlets
py-jupyter-notebook py-wcwidth
py-monotonic py-widgetsnbextension
py-nbconvert
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Adds the following packages:
node-js py-backports-abc py-functools32 py-pycurl py-vcversione
npm py-certifi py-jsonschema py-tornado py-zmq
- Added python packages that are dependencies for the Jupyter suite
- Update new python packaages to use extension package install function.
- Added npm and node-js packages
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* Rename packages
* Upcasing depends_on() in packages.
* Downcased extends('r')
* Fixed erroneously changed URL that had slipped through.
* Fixed typo
* Fixed link from documentation into package source code.
* Fixed another doc problem.
* Changed underscores to dashes in package names.
* Added test to enforce lowercase, no-underscore naming convention.
* Fix r-xgboost
* Downcase more instances of 'R' in package auto-creation.
* Fix test.
* Converted unit test packages to use dashes not underscores
* Downcase `r` in the docs.
* Update module_file_support.rst
Fix r->R for class R.
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* Use zlib's "fossil" site for old tarballs
Following citibeth's suggestion in #2732, use zlib's "fossil"
site (not to be confused with the sqlite team's VCS...) for retrieving
old tarballs.
Digests for 1.2.{8,10} match and both install for me on CentOS 7.
* Use zlib's "fossil" URL as the one true URL
Everything seems to be available at zlib's "fossil" URL, so just use
it as the one and only url.
(and fix a flake8 complaint about a comment)
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* add package for conduit
* try to fix main conduit docstring
* use join_path instead of pjoin
* address a few requests in pr #2670
change name of 'github-master' to 'master'
change 'docs' variant to 'doc', set default to False
remove explicit +shared variant spec for silo and hdf5 deps
(in the conduit +shared case) cases since they default to True
add reference to static rpath issue
(https://github.com/LLNL/spack/issues/2658)
* address pr #2670 requests
add todos and more info on why variants for deps where selected
use python module install python to enable spack activate
use .format instead of %s
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* add version 1.8.0
* remove depends_on('cmake') as it is now unecessary
* remove 'coarrays' as a virtual package
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* zlib@1.2.10 and R do not get along, work around it
R's configure script has trouble with version numbers > 1.2.9.
This works around it by constraining R to 1.2.8.
I'm working with some R folk on getting it fixed going forward.
* Add adamjstewart's change.
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* Update to latest zlib version, server no longer provides older version
Funded-by: IDEAS
Project: IDEAS/xSDK
* Add alternative URL for previous release of zlib
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* Fix issues when a package provides the same vdep twice.
- provides() now adds to a set of provided vdeps instead of a single one.
* flake8
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Concretization preserves deptypes
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* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives
* _dep_types -> dependency_types
* using a meta-class to inject directives into packages
* directives are lazy
fixes #2466
* directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin
* directives.py: added a test for simple inheritance of directives
* Minor improvement requested by @tgamblin
CMakePackage: importing names from spack.directives
directives: wrap __new__ to respect pep8
* Refactoring requested by @tgamblin
directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
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* init yorick package
* attempt at picking up SPACK's compiler choice, todo ~X variant.
* sphinx docstring error ?
* version# tarball, ~X default, docstring fix
* sphinx docstring fix(?)
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The upstream luafilesystem tarball/version had a wayward/inconsistent
underscore in their more recent version tag. The played badly with
our package fetching machinery (due to recent changes?).
Upstream cleaned up their bit which required some touchups here.
- updated the url
- updated the version (digest)
- updated the format statement for the path to the rockspec.
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* Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark
Tinyxml comes in two flavors, 1 and 2. Each comes in several
versions... So they cannot be easily united into a single package.
* Use CMakePackage and friends, add copyright
Also eleminate debug/release variants, since it no longuer fits in the
CMakePackage format.
* Remove unnecessary url
* spdlog now has tagged releases
* Remove unnecessary url argument
* Fewer quotes in cmake args, because magic
* Incorrect base class for tinyxml
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* Ensure that every package has a license
Also fixes URLs with http://http:// doubled.
This is a continuation of #2656.
* Add license to every file in Spack
* Make sure Todd is the author of all packages
* Fix flake8 tests
* Don't license external Sphinx docs
* Don't display licenses in tutorial example packages
Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
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sigh.
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* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface
* Fixed install error in cmor package
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface
* Fixed install error in cmor package
* Modifiying fontconfig file to allow install in OpenSuse 13.2
* Adding pkg-config dependency to freetype and libxml2
* Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
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Small fix for the homepage of the package libspatialindex.
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Trilinos dependency is very heavy, the zoltan one is light. I'm not sure
if there is a situation where one needs the former.
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* Update digest for vim@8.0 tarball.
The digest appears to have changed.
The new digest value matches the value in their
[MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS)
file.
* Change ftp.vim.org -> github.com/vim/vim/archive
Vim seems to do weekly releases, but the name of the tarball on
ftp.vim.org doesn't change so we have to regularly play 'update the
digest' (aka Internet whack-a-mole).
This commit changes the url so that we are now downloading particular
versions from the Vim project's github archive.
I didn't walk back through of time to get all of the versions that
used to be explicit. I grabbed the final `7.4` and the current `8.0`
releases. If people need more we can add them.
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* Add gawk, GNU awk.
* flake8 fix.
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* Add package for fastqc
This tool is a java mess. Their Way To Do It is to just copy the entire
tree into it's final resting place, make the perl script at the top
level executable and take it from there.
Yuck.
This package assumes that `set_executable` actually sets all the user
bits. If that change doesn't go in, then something equivalent needs to
be done.
* Use chmod to make fastqc executable
I haven't gotten any feedback on changing set-executable, so switch to
using chmod (from the cuda package).
* Flake8 cleanup
* Install files neatly, don't just copy top level of dir
Rather than blindly copying everything in the distribution, carefully
put the necessary bits into reasonable places. Neatness counts, etc...
This requires patching the `fastqc` perl script, so this commit adds a
patch file.
* Additional pep8 cleanup
* Let dependency handle adding jdk to PATH
* Flake8 cleanup
* Ensure that java is on PATH
I thought that the run dependency on the jdk would put
java on my PATH, but it does not appear to work.
For now, do it by hand.
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AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage
* Updated Blitz++ to use customized make build and test targets
* Removed flake8 error
* Removed make test customization, added make install customization, need to figure out issues with multiple make targets
* Changed build_targets and install_targets to normal attributes
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* py-markdown: Add new package for python-markdown.
* py-markdown: Added restrictions on Python version.
* py-markdown: Removed upper-limit on compatible Python versions.
* py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
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