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* add latest versions and correct waves2amr details
* update commit associated with v2.1.0
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Set MPI_C_COMPILER etc. env vars when building with fujitsu-mpi, which
override CMake logic. Without using these variables to explicitly
request the Fujitsu MPI wrappers, the builtin CMake logic is unwilling
to use these wrappers unless the Fujitsu compiler is used, but they
should be used for %clang as well.
This avoids patching CMake module files like in #16864, primarily to
avoid the possibility of altering behavior for specs that do not use
%fj or ^fujitsu-mpi.
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* gaudi: upstream patch when @38.1 for missing #include <list>
* gaudi: apply list patch for all versions
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Co-authored-by: Mikael Simberg <simbergm@cscs.ch>
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* r-ggplot2: v3.5.1, r-haven: v2.5.4, r-jsonlite: v1.8.8, r-pkgload: v1.3.4, r-vctrs: v0.6.5
* r-scales: v1.3.0
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* whizard: Add a patch to fix builds with pythia8 >= 8.310
* Add whizard 3.1.4 and update accordingly
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* octave: use pcre2 for @8:
* Add 'pcre2' variant to octave to control pcre vs. pcre2
* Update var/spack/repos/builtin/packages/octave/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
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Co-authored-by: Alex Richert <alexander.richert@noaa.gov>
Co-authored-by: Alec Scott <hi@alecbcs.com>
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* fastjet: Add a cxxstd variant
* Use f-strings
* Add multi=False
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* New package: qpdf
* Update var/spack/repos/builtin/packages/qpdf/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
* Fix format of cmake_args
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Co-authored-by: Alec Scott <hi@alecbcs.com>
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* Quote python for shlex
* Remove python path quoting patch
* spack env: Allow `C` "protocol" for config_path
When running spack on windows, a path beginning with `C://...` is a valid path.
* Remove makefile from ci rebuild
* GPG use llnl.util.filesystem.getuid
* Cleanup process_command
* Remove unused lines
* Fix tyop in encode_path
* Double quote arguments
* Cleanup process_command
* Pass cdash args with =
* Escape parens in CMD script
* escape parens doesn't only apply to paths
* Install deps
* sfn prefix
* use sfn with libxml2
* Add hash to dep install
* WIP
* REview
* Changes missed in prior review commit
* Style
* Ensure we handle Windows paths with config scopes
* clarify docstring
* No more MAKE_COMMAND
* syntax cleanup
* Actually correct is_path_url
* Correct call
* raise on other errors
* url2path behaves differently on unix
* Ensure proper quoting
* actually prepend slash in slash_hash
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Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
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* dla-future: Add 0.4.1
* Use ninja as generator in dla-future
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Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* flux-sched: set the version if the ver file is missing
problem: flux-sched needs a version, it normally gets this from a
release tarball or from git tags, but if using a source archive or a git
clone without tags the version is missing
solution: set the version through cmake based on the version spack sees
when the version file is missing
* Update var/spack/repos/builtin/packages/flux-sched/package.py
Co-authored-by: Alec Scott <hi@alecbcs.com>
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Co-authored-by: Alec Scott <hi@alecbcs.com>
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* miniforge3: add new version with mamba installation
* fix styling
* update maintainers
* Fix variant directive ordering
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When an include filter on externals is present, implicitly
include libcs.
Also, do not penalize deprecated versions if they come
from externals.
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* pythia8: add a cxxstd variant
* Add multi=False, fix regexp
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Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
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Problem: the libsodium download endpoints are not reliable,
they fail multiple times a day for several of our automated
pipelines.
Solution: use the GitHub releases and branches.
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
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* octopus: add hash for new version
* octopus: add --enable-silent-deprecation flag when @14.1:
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* amr-wind: add missing variants
* Fix copy and paste.
* waves2amr is only available on amr-wind@2.0
* Style.
* Use satisfies.
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* orca: added latest version 5.0.4
* Fixed openmpi versions
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* Initial commit for adding hipsparselt recipe
* correct the style errors
* remove master version
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GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc
headers. We're using `-isystem` for libc, which puts those headers too
early in the search path. `-idirafter` fixes this so `include_next`
works.
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* Add cublas and roblas variants to hypre.
* Fix mistakes.
* Remove newline.
* Address suggestions.
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* Bump up the version for ROCm-6.1.0
* Style check error correction and patch files
* Update for rocm-openmp-extras 6.1
* updating rocm-openmp-extras and math libraries with 6.1
* Style check error correcion
* updating hipcub, hipfort & miopen-hip for 6.1
* Rocm-openmp-extras and some mathlib updates
* iAudit error correction and rocmlir update
* Updating dependency on suite-sparse and adding path
* Style check error corection
* hip-tensor 6.1.0 update
* rdc 6.1 needs grpc 1.59.1
* rvs 6.1 updates and patch
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* add darshan-3.4.5 packages, update URLs
* py-setuptools version switches for py-darshan
* more py-darshan test dependencies
* try a conditional importlib_resources dependency
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* iq-tree: add new version delete duplicate package
* Replace iqtree2 dependency
orthofinder: replace iqtree2 with iq-tree@2
py-phylophlan: replace iqtree2 with iq-tree@2
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* Update CERNLIB
Update CERNLIB
* Update package.py
* Update package.py
* [@spackbot] updating style on behalf of andriish
* cernlib: merge crypto->crypt patches
* cernlib: depends_on xbae when `@2023:`
* cernlib: patch for Xbae and Xm link order (DSO)
* [@spackbot] updating style on behalf of andriish
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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* unmaintained pkgs: bump versions
* Changes following review feedback
* glm: update cmake dependency
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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