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2019-10-01libcerf:add CFLAGS for fujitsu compiler (#12990)noguchi-k1-0/+3
* libcerf:add CFLAGS for fujitsu compiler * fix for flake8
2019-09-30Update nano (#12980)egreen771-3/+51
2019-09-30Revert "update neovim (#12965)" (#12978)Adam J. Stewart1-2/+1
This reverts commit 86a85b7eb22ccf69489a4bfbd947da7dfedcf233.
2019-09-30petsc, slepc: add new versions - 3.12.0 (#12979)Satish Balay2-2/+8
2019-09-30Fix GCC environment variables for external installations (#12454)Seth R. Johnson1-5/+25
Unlike the compiler binary name search logic, the `setup_environment` in GCC's package assumes the compiler names are *exactly* `gcc`, `g++`, etc. In many external installations (Homebrew, Macports) the installation includes only *suffixed* versions such as `gcc-9`. This patch uses the GCC compiler search suffixes to actually locate the correct filenames for the installed compilers, allowing the Spack-generated module file to have useful definitions of CC, CXX, etc. It also allows for the possibility that the user's external installation of GCC is compiled without Fortran support, in which case the `FC` environment variables are not defined.
2019-09-30otf2: add configure args to specify compiler commands. (#12711)t-karatsu1-0/+4
* otf2: add configure args to specify compiler commands. * Modify the reference of the compile commands.
2019-09-29The perl-uri-escape package duplicates perl-uri (#12971)Glenn Johnson6-25/+6
* The perl-uri-escape package duplicates perl-uri The Perl URI::Escape module is in the Perl URI package so the Spack perl-uri-escape package is a duplicate of the perl-uri package. This PR does the following: - replace `depends_on('perl-uri-escape')` with `depends_on('perl-uri')` in packages that dependend on perl-uri-escape - add the version from perl-uri-escape to perl-uri - remove the unneeded dependency from perl-uri - remove the perl-uri-escape package * Reinstated perl-test-needs dependency Put the perl-test-needs dependency for perl-uri back in but set it to type='test'. * For tests to succeed the type must be ('build', 'test')
2019-09-28raxml: simplified recipe by removing SIMD variants (#12952)Massimiliano Culpo1-46/+12
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953)t-karatsu3-0/+86
2019-09-28vdt: simplified recipe by removing SIMD variants (#12954)Massimiliano Culpo1-55/+8
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28correct with-xxx-lib= options (#12964)Jaroslav Hron1-1/+1
2019-09-28update neovim (#12965)Patrick Schratz1-1/+2
2019-09-28bolt: add a new version, 1.0rc2 (#12966)Shintaro Iwasaki1-0/+1
2019-09-27eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970)Daryl W. Grunau1-8/+8
2019-09-27py-adios package: restrict python dependency to <=3.6.x (#12932)Ross Miller1-0/+8
The adios code (currently) won't compile against the Python 3.7 C API. This change adds a dependency on 3.6 or less.
2019-09-27Tau package: turn off unsupported variants by default on OSX (#12890)Kevin Huck1-5/+11
2019-09-27New package: libibumad (#12886)G-Ragghianti1-0/+27
2019-09-27New package: maker and dependencies (#12904)Glenn Johnson42-6/+997
2019-09-26qt4: fix 'arch' string due to microarchitecture change (#12957)Seth R. Johnson1-1/+1
qt4 fails to build because it's expecting something like 'x86_64' rather than 'broadwell'.
2019-09-26Update target comparison semantic for a few packages (#12947)Massimiliano Culpo6-14/+14
Use spec.target.family instead of spec.architecture.target
2019-09-26Removed references to '(-march|-mtune|-mcpu)=native' (#12948)Massimiliano Culpo11-37/+10
Now that Spack injects microarchitecture specific optimizations for the selected target, packages should avoid adding flags that could step over those.
2019-09-26parsimonator: simplified recipe by removing SIMD variants (#12949)Massimiliano Culpo1-49/+11
Now the support for SSE3 or AVX is tested on the selected target
2019-09-25New package: flibcpp (Fortran bindings to C++ standard library) (#12926)Seth R. Johnson1-0/+44
2019-09-25butterflypack package: add version 1.0.3 (#12927)liuyangzhuan1-1/+2
2019-09-25interproscan package: add version 4.8, patch for version 5 (#12897)Glenn Johnson3-3/+222
This PR adds interproscan-4.8, which has a completely different build system than version 5. Note that this builds for running on a host as opposed to a queue system. I am fairly certain that a queue system can be configured later. This PR also adds a patch for intrproscan-5 to build when the user building the packages has a large GID by setting posix mode for tar.
2019-09-25libspatialite package: add version 3.0.1 and missing dependencies (#12843)Sinan1-3/+7
2019-09-25py-imageio package: add versions 2.4.1 and 2.5.0 (#12884)Sinan1-0/+2
2019-09-25llvm, mesa: update target comparison semantics (#12914)Matthieu Dorier2-7/+10
* llvm: fixed issues with syntax and formatting * use spec.architecture.target.family * use spec.target instead of spec.architecture.target * mesa: use == instead of __contains__
2019-09-25libflame: fix macOS build (#12950)Adam J. Stewart2-0/+241
2019-09-25openblas: fixed a query to target family (#12910)Matthieu Dorier1-1/+1
2019-09-25portage: fix RelWithDebInfo build (#12944)Christoph Junghans2-0/+19
2019-09-25kokkos-kernels: initial commit (#12934)Christoph Junghans2-0/+106
2019-09-24Upcxx package: remove warning, add version 2019.9.0 (#12880)Mathias Jacquelin1-38/+28
A function added to this package ran as part of importing it and printed a warning for most Spack invocations, this removes the warning message. Also: * Use compilers directly instead of Spack compiler wrappers (since references to the compiler are embedded in text and binary files of the installation) * Add 'cross' variant for setting CROSS environment variable for build * Set UPCXX_INSTALL for generated module files * Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files on Cray systems * Also set UPCXX_NETWORK in build environment for Cray systems
2019-09-24heaptrack: added new package at version 1.1.0 (#12844)Simo Tuomisto1-0/+36
2019-09-24Add missing dependency to perl-xml-parser (#12903)Glenn Johnson1-0/+1
This PR adds the following dependency: + depends_on('perl-libwww-perl', type=('build', 'run'))
2019-09-24Added missing dependencies for perl-list-moreutils (#12900)Glenn Johnson1-0/+3
The following dependencies were added: + depends_on('perl-exporter-tiny', type=('build', 'run')) + depends_on('perl-list-moreutils-xs', type=('build', 'run'))
2019-09-24Added depencies to perl-libwww-perl (#12899)Glenn Johnson1-0/+14
The following dependencies are needed for perl-libwww-perl according to https://metacpan.org: + depends_on('perl-encode-locale', type=('build', 'run')) + depends_on('perl-file-listing', type=('build', 'run')) + depends_on('perl-html-parser', type=('build', 'run')) + depends_on('perl-http-cookies', type=('build', 'run')) + depends_on('perl-http-daemon', type=('build', 'run')) + depends_on('perl-http-date', type=('build', 'run')) + depends_on('perl-http-message', type=('build', 'run')) + depends_on('perl-http-negotiate', type=('build', 'run')) + depends_on('perl-lwp-mediatypes', type=('build', 'run')) + depends_on('perl-net-http', type=('build', 'run')) + depends_on('perl-try-tiny', type=('build', 'run')) + depends_on('perl-uri', type=('build', 'run')) + depends_on('perl-www-robotrules', type=('build', 'run'))
2019-09-24Add missing dependencies to perl-http-daemon (#12898)Glenn Johnson1-0/+2
Added the following dependencies: + depends_on('perl-http-date', type=('build', 'run')) + depends_on('perl-module-build-tiny', type='build')
2019-09-24spdlog: added version 1.4.1 (#12917)Axel Huebl1-1/+23
Add newest release with ability to pre-build as shared or static library.
2019-09-23Fix installation permissions on BLIS and libflame libs (#12919)Adam J. Stewart4-3/+80
* Fix installation permissions on BLIS and libflame libs * Fix undefined symbols
2019-09-23libceed package: add version 0.5 (#12875)Jed Brown1-2/+3
Also enable vectorization via -O3 for gcc/clang
2019-09-23QT package: only enable fontconfig when freetype is enabled (#12574)Seth R. Johnson1-4/+4
The 'fontconfig' option is only valid when freetype is enabled.
2019-09-21environment-modules: add version 4.3.1 (#12893)Xavier Delaruelle1-1/+2
2019-09-20czmq package: add autoreconf stage (#12846)Paul1-0/+4
2019-09-20charliecloud package: add version 0.11 and test dependency (#12861)Jordan Ogas1-0/+4
2019-09-20New package: py-gast (#12874)Sinan1-0/+18
2019-09-20intel-tbb: fix typo.t-karatsu1-1/+1
2019-09-20py-protobuf package: fix import error for Python 2.x (#12873)Sinan1-0/+8
2019-09-20targets: adjust packages to use new specific targets semanticsMassimiliano Culpo42-67/+67
Seamless translation from 'target=<generic>' to either - target.family == <generic> (in methods) - 'target=<generic>:' (in directives) Also updated docs to show ranges in directives.
2019-09-19CLAW Compiler: added version 2.0.1 (#12878)Valentin Clement (バレンタイン クレメン)1-0/+1
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