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2023-02-27git-lfs: Add version 3.3.0 (#35671)Rémi Lacroix1-0/+1
2023-02-27Dyninst: add version 12.3.0 (#35630)Tim Haines1-0/+1
2023-02-27Package/py pysam macos (#33851)Luke Diorio-Toth2-4/+15
* cleaned up style, linked to external htslib * removed htslib/bcfrools/samtools deps, use bundled libs instead the pysam package includes the necessary libs to link to, so it wasn't even using linked libs when building * fixed style * revert to using external htslib currently uses bundled samtools and bcftools, and there is no way to use external versions for those dependencies * added libs property to htslibs package added support for lib64 * added htslib name
2023-02-27onednn: add variant to use Arm Compute Library on aarch64 (#35643)Annop Wongwathanarat1-2/+26
* onednn: add variant to use Arm Compute Library on aarch64 * Update cmake version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Shorten macro definition Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update cpu/gpu_runtime variants * Update acl variant when 1.7+ Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [@spackbot] updating style on behalf of annop-w * Add dependencies for new runtimes * Fix dependency package name to oneapi-level-zero --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27py-awkward: new version 1.10.*, 2.0.* (#35549)Wouter Deconinck5-11/+157
* py-awkward: new version 1.10.*, 2.0.* Lots of changes in 2.0.*, see https://github.com/scikit-hep/awkward/releases. This will need some extra testing. * py-awkward: hatchling * Update var/spack/repos/builtin/packages/py-awkward/package.py * Update var/spack/repos/builtin/packages/py-awkward/package.py * py-scikit-build-core: new and improved py-scikit-build * py-awkward-cpp: new package * py-awkward: add depends_on py-awkward-cpp * py-awkward: depends_on py-packaging * py-awkward-cpp: new versions pinned by py-awkward * py-scikit-build-core: additional depends_on * py-awkward: branch master deprecated * py-pytest-subprocess: new package * py-pytest: new version 7.2.1 * py-scikit-build-core: add tests dependencies * [@spackbot] updating style on behalf of wdconinc * py-scikit-build-core: two more test dependencies * py-pytest: depends_on py-exceptiongroup * py-awkward: add pytest support * py-pytest: suggestions from review * py-scikit-build-core: suggestions from review * Update var/spack/repos/builtin/packages/py-awkward-cpp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-awkward: depends_on pyyaml when @:1, order old deps last * [@spackbot] updating style on behalf of wdconinc * py-awkward: move some opt deps to test, order test deps * py-awkward: remove test dependencies --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27pango: add 1.50.13 (#35709)Michael Kuhn1-0/+1
2023-02-27osi: add version 0.108.7 (#35689)dlkuehn1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27clp: add version 1.17.7 (#35688)dlkuehn1-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27hpctoolkit: fix broken patches (#35711)Harmen Stoppels3-8/+223
The patches don't have a stable checksum.
2023-02-27Celeritas: new versions 0.2.1 and 0.1.5 (#35704)Seth R. Johnson1-7/+35
* celeritas: new versions 0.1.5 and 0.2.1 * celeritas: deprecate old versions
2023-02-27OpenMPI: add the 4.1.5 release (#35677)Howard Pritchard1-2/+5
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-02-27r-twosamplemr: add new package and dependencies (#35683)Glenn Johnson14-0/+391
2023-02-27hdf5-vol-cache: add v1.1 (#35685)Larry Knox1-0/+1
2023-02-27go: set GOMAXPROCS to limit number of build processes (#35703)Alex Richert1-0/+1
2023-02-27py-nbqa: add new package (#35707)Adam J. Stewart1-0/+21
2023-02-24ompss-2 dependencies (#35642)Vinícius1-0/+4
2023-02-23WarpX 23.02 (#35633)Axel Huebl2-2/+5
Update `warpx` & `py-warpx` to the latest release.
2023-02-23p7zip: Add new versions from fork (#35627)Mosè Giordano1-3/+15
2023-02-23htop: Add version 3.2.2 (#35621)Rémi Lacroix1-0/+1
2023-02-23ncdu: Add version 1.18.1 (#35620)Rémi Lacroix1-0/+1
2023-02-22collier: new versions 1.2.6, 1.2.7 (#35580)Wouter Deconinck1-0/+2
Additional functionality, per https://collier.hepforge.org/releasehist.html. No mention of build changes.
2023-02-22py-mpi4jax: add new package (#35551)Adam J. Stewart1-0/+31
* py-mpi4jax: add new package * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-02-22Add CCE support to hipfort (#35609)luker1-0/+10
* Add CCE support to hipfort * Update package.py
2023-02-21ExaGO 1.5.1 release (#35595)Cameron Rutherford2-28/+43
* Update exago w/ 1.5.1 and small updates to hiop. * Fix styling. * Add RAJA back to ExaGO package. * Update RAJA requirement for ExaGO and HiOp. * Update last RAJA requirement in HiOp.
2023-02-21Package slate: Improved MPI launcher search for smoke tests (#35448)G-Ragghianti1-3/+13
* Improved MPI launcher search for smoke tests * Improving mpi launcher search * Removing redundant logic
2023-02-21root: new version 6.28.00 (#35556)Wouter Deconinck1-2/+9
* root: new version 6.28.00 Full changelog: https://github.com/root-project/root/compare/v6-26-10...v6-28-00 Based on the CMakeLists.txt file, no major build system changes. Upgraded requirements for cmake added. * root: variant jemalloc deprecated * root: rm define gsl_shared because unused "`gsl_shared` is unused" per https://github.com/root-project/root/pull/12203 (and has always been unused) * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-21Add new sphinx rtd theme release 1.2.0 (#35579)MicK72-2/+25
* Add new sphinx rtd theme release 1.2.0 The new release helps with supporting more recent version of docutils * set docutils officially supported version * add jquery dependency for sphinx-rtd-theme * add conflict with jquery version Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * correct dependency * fix version dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * set sphinx version * fix sha256 * add version for flit-core Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-21py-nbmake: add new versions (#35591)Adam J. Stewart1-0/+4
2023-02-21py-jax: add v0.4.3 (#35460)Adam J. Stewart3-60/+64
* py-jax: add v0.4.3 * Minimum version is minimum * py-jax no longer has cuda variant * Enable CUDA by default * Link to discussion of upper bound
2023-02-21cmake: changed the regex to search for externals (#31688)Oliver Perks1-1/+1
2023-02-21Add pyedr and panedr (#35576)Rocco Meli2-0/+53
* add pyedr * black * add panedr * Update var/spack/repos/builtin/packages/py-pyedr/package.py * Update var/spack/repos/builtin/packages/py-panedr/package.py * Update var/spack/repos/builtin/packages/py-pyedr/package.py * Update var/spack/repos/builtin/packages/py-pyedr/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pyedr/package.py * Update var/spack/repos/builtin/packages/py-panedr/package.py --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-21ant: add v1.10.13 and deprecate previous versions due to CVE (#35572)Alec Scott1-12/+63
2023-02-21superlu-dist: extend when to apply a patch (#32985)luker1-1/+1
2023-02-21ccls: add v0.20220729 (#35593)Massimiliano Culpo1-0/+3
2023-02-21mvapich2: update checksum (#35587)Massimiliano Culpo1-1/+1
See #29340 Co-authored-by: Nat Shineman <shineman.5@buckeyemail.osu.edu>
2023-02-20dd4hep: extend conflict on CMake (#27125)Thomas Madlener1-3/+3
2023-02-20Add pytng (#35575)Rocco Meli1-0/+26
* add pytng * black * add setuptools * fix * Update var/spack/repos/builtin/packages/py-pytng/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pytng/package.py * Update var/spack/repos/builtin/packages/py-pytng/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-20apptainer use the --with-suid configure option (#35513)simonleary-umass-edu1-1/+5
2023-02-20Add Alluxio v2.9.1 and deprecate previous versions due to CVE (#35574)Alec Scott1-3/+18
2023-02-20httpd: add v2.4.55 and deprecate previous versions due to CVE-2022-31813 ↵Alec Scott1-4/+23
(#35571)
2023-02-20Add restic v0.15.1 (#35563)Alec Scott1-0/+2
2023-02-20Add py-python-lsp-server v1.7.1 (#35561)Alec Scott1-0/+1
2023-02-20Add activemq v5.17.3 and deprecate previous version due to CVE (#35573)Alec Scott1-1/+10
2023-02-20scale mpi dependency is incorrect (#35385)Greg Becker1-1/+1
2023-02-20xyce: add patch for pymi parameter merge and add maintainer (#35421)Paul Kuberry1-1/+9
* xyce: add maintainer * xyce: add patch for pymi parameter merge
2023-02-20Add go v1.20.1, 1.19.6 and un-deprecate previous versions without CVEs (#35560)Alec Scott1-10/+6
2023-02-20Fix kokkos package.py to filter spack wrappers in launch compiler and cmake ↵Patrick Bridges1-0/+7
configs (#35494) Kokkos when compiled by spack without +wrapper could potentially capture the spack compiler wrappers, resulting in cmake configs and kokkos_launch_compiler trying to run the spack compiler wrapper after installation.
2023-02-20Update xtb 6.6.0 (#35436)Sebastian Ehlert2-2/+56
2023-02-20Add GNINA and related packages (#35439)Rocco Meli5-9/+159
2023-02-20py-torchbenchmark: add new package (#35443)Adam J. Stewart7-0/+184
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