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2020-07-09ltrace: Disable "-Werror". (#17444)Rémi Lacroix1-0/+5
Some functions used by ltrace have been deprecated in recent versions of glibc.
2020-07-09openslide: Add missing dependencies. (#17445)Rémi Lacroix1-0/+3
2020-07-08new package: ligra (#17425)Sinan1-0/+44
* new package: ligra * setup run environment * tidy up * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * flake8 Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-08enable flatcc to be built with gcc@9.X.X (#17430)Frank Willmore1-0/+3
`gcc` 9 and above have more warnings that break the `flatcc` build by default, because `-Werror` is enabled. This loosens the build up so that we can build with more compilers in Spack. - [x] Add `-DFLATCC_ALLOW_WERROR=OFF` to `flatcc` CMake arguments Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-07-08Buildcache: bindist test without invoking spack compiler wrappers. (#15687)Patrick Gartung4-9/+409
* Buildcache: * Try mocking an install of quux, corge and garply using prebuilt binaries * Put patchelf install after ccache restore * Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS * Remove mirror at end of bindist test * Add patchelf to Ubuntu build env * Revert mock patchelf package to allow other tests to run. * Remove depends_on('patchelf', type='build') relying instead on * Test fixture to ensure patchelf is available. * Call g++ command to build libraries directly during test build * Flake8 * Install patchelf in before_install stage using apt unless on Trusty where a build is done. * Add some symbolic links between packages * Flake8 * Flake8: * Update mock packages to write their own source files * Create the stage because spec search does not create it any longer * updates after change of list command arguments * cleanup after merge * flake8
2020-07-08Add missing file (#17426)iarspider1-0/+60
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-07-08r-usethis: new version and dependencies (#17411)Amjad Kotobi1-1/+6
* r-usethis: new version and dependencies * r-usethis: fix in dependency
2020-07-08Ginkgo: new versions (#17413)tcojean2-0/+14
* Add new Ginkgo versions with HIP support. * Drop HIP support until more ROCm packages are integrated.
2020-07-08typhon: fix build with Fujitsu compilers (#17424)ketsubouchi1-0/+4
2020-07-08ncl: fix compilation errors with Intel compilers (#17391)TZ1-1/+3
The Intel compilers are more strict and require special command line options (like -std=c99) to properly compile NCL.
2020-07-07Fix YODA and Rivet recipes (#17412)iarspider2-6/+53
* Fix Rivet recipe; restrict Yoda versions for a give Rivet version * Fix YODA recipe * More tweaks to YODA version requirements * Flake-8
2020-07-07oneDNN: add v1.5.1 (#17419)Adam J. Stewart1-1/+2
2020-07-07GDAL: add v3.1.2 (#17416)Adam J. Stewart1-1/+2
2020-07-07votca-tools: fix build with mkl (#17414)Christoph Junghans1-1/+1
2020-07-07snappy: added v1.1.8 (#17397)Frank Willmore1-1/+2
2020-07-07jube: added v2.4.0 (#17404)g-mathias1-0/+1
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-07abseil-cpp: added v20200225.2 (#17383)figroc1-1/+2
2020-07-07libtree: fixed checksums (#17393)Harmen Stoppels1-3/+3
The hash was wrongly computed for the `tar.gz` that Github provides, not the custom tarball which includes submodules as well.
2020-07-07bliss: add spaces to __DATE__ (#17385)ketsubouchi1-0/+1
C++11 requires a space between literal and string macro.
2020-07-07mumax: new package at v3.10beta (#17398)Glenn Johnson1-0/+62
This PR creates a new spack package for mumax: GPU accelerated micromagnetic simulator. This uses the current beta version because - it is somewhat dated, ~2018 - it is the only one that supports recent GPU kernels
2020-07-07nco: added v4.8.[0,1] and v4.9.[0-3] (#17389)TZ1-0/+6
2020-07-07ncview: added v2.1.8 (#17388)TZ1-0/+1
2020-07-07gunrock: improved package recipe (added variants for applications and ↵Sinan1-3/+97
others) (#17340) Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-07-06mpifileutils: add v0.10.1Adam Moody1-3/+4
2020-07-06Fix gcc + binutils compilation. (#9024)cedricchevalier191-3/+1
* fix binutils deptype for gcc binutils needs to be a run dependency of gcc * Fix gcc+binutils build on RHEL7+ static-libstdc++ is not available with system gcc. Anyway, as it is for bootstraping, we do not really care depending on a shared libstdc++. Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2020-07-06Add Rivet and YODA (#17372)iarspider30-0/+1238
* Add Rivet and YODA * Add patches * Flake-8 * Set level for Rivet patches * Syntax fix * Fix dependencies of Rivet * Update var/spack/repos/builtin/packages/rivet/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-06esmf: set ESMF_COMM=intelmpi also for ^intel-mpi (#17387)TZ1-1/+1
Not only intel-parallel-studio+mpi provides Intel MPI but also intel-mpi.
2020-07-06psi4: fix "filter_compilers" signature (#17375)fcannini1-1/+4
2020-07-05GMT: add v6.1.0 (#17384)Adam J. Stewart2-2/+16
2020-07-05acl: fix depends error (#17341)darmac1-0/+4
2020-07-05brpc: fix depends issue (#17347)darmac1-0/+1
2020-07-05[opencascade] depends_on freetype, tcl, tk, gl (#17357)Wouter Deconinck1-0/+10
* [opencascade] depends_on freetype, tcl, tk, gl * [opencascade] new version 7.4.0p1 and url_for_version
2020-07-05New version of LHAPDF: 6.3.0 (#17367)iarspider1-0/+1
2020-07-05protobuf: add versions (#17381)figroc1-1/+6
2020-07-05amdblis bump to 2.2. (#17369)yellowhat1-0/+1
2020-07-05package Amber: amber tools 20 (#17374)g-mathias1-13/+30
* package amber: added amber_tools 20 hash; added minor version for amber_tools * fix flake8 issues Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-05openblas: fix fj compiler support in 0.3.10 (#17376)Gilles Gouaillardet2-0/+14
The latest 0.3.10 version openblas changed how Fortran libraries are detected, and this broke Fujitsu compiler support. This (new) openblas patch addresses that issue.
2020-07-05update aspect to 2.2.0 (#17379)Timo Heister1-1/+4
2020-07-05SciPy: add v1.5.1 (#17380)Adam J. Stewart1-1/+2
2020-07-05inel-mpi: fix for wrong structure name instroduced in ea8a0be4 (#17382)TZ1-1/+1
it's mpi_compiler_wrappers and not mpi_compiler._wrappers fixes 2nd part of #17371
2020-07-05Fix Intel MPI super invocation, again (#17378)Adam J. Stewart1-1/+1
2020-07-04dtfbplus: New package. (#15191)fcannini2-0/+185
* dtfbplus: New package. * dftbplus: Addresses @adamjstewart's comments on PR #15191 * dftbplus: Fixes format() calls that slipped in previous commit. * dftbplus: Appease flake8. * dftbplus: Change 'url' and misc. fixes. * Add a resource to do the job of './utils/get_opt_externals'
2020-07-03py-python-swiftclient: added v3.10.0 (#17352)Amjad Kotobi1-0/+1
2020-07-03elpa: added v2019.11.001 and v2020.05.001 (#17368)g-mathias1-2/+3
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-03libelf: added extra url (#17358)Paul R. C. Kent1-1/+5
2020-07-03jube: added v2.3.0 (#17366)g-mathias1-0/+1
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-03Package request: HPCG (#17350)yellowhat1-0/+78
* use patch from upstream Co-authored-by: Michael Kuhn <michael.kuhn@informatik.uni-hamburg.de>
2020-07-02blktrace: use Spack compiler wrappers (#17365)ketsubouchi1-0/+7
2020-07-02blat: use SPACK_CC (#17364)ketsubouchi1-0/+1
2020-07-02glusterfs: add pkgconfig dependency (#17343)darmac1-0/+1
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