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2020-01-08lrslib: fix return value (#14422)noguchi-k2-0/+40
2020-01-08cmake: Create an optimized release build (#14414)Chuck Atkins1-1/+8
2020-01-08Adding a new package, scikit-build, which is useful for building Python ↵Corey adams1-0/+27
Extensions (#14417) * Adding a new package, scikit-build, which is very useful for building python extensions * Update package.py * Update package.py Trying to address flake8 corrections * Update var/spack/repos/builtin/packages/py-scikit-build/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-scikit-build/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-07hpcviewer: add version 2019.12 (#14419)Mark W. Krentel1-0/+9
Add conflicts for aarch64 and darwin.
2020-01-07Record a new ROOT/GCC incompatibility (#14371)Hadrien G1-0/+4
2020-01-07py-rapidjson: new package at 0.9.1 (#14280)Justin S1-0/+18
* py-rapidjson: new package at 0.9.1 * py-rapidjson: rename to py-python-rapidjson, use PyPI mirror * py-python-rapidjson: add missing deps * python-rapidjson: use short PyPI url * py-python-rapidjson: remove extra dependencies
2020-01-07r-ldheatmap: new package at 0.99-7 (#14405)Justin S1-0/+22
2020-01-07NumPy 1.18.1 requires Cython 0.29.14 (#14418)Adam J. Stewart2-2/+5
2020-01-07Package/opencv: cudacodec fix (#14409)Sinan1-0/+8
* create new variant, fix build error * flake8 * add conflict, re-arrange config arg for cudacodec
2020-01-07gdb: add version 8.3.1 (#14413)Matthias Diener1-0/+1
2020-01-07ncl: Add missing fontconfig dependency (#14411)Michael Kuhn1-1/+3
Moreover, cairo needs to have its freetype variant enabled.
2020-01-07gdal: Fix libgeotiff dependency (#14410)Michael Kuhn1-1/+1
gdal@2.4.3 is missing the libgeotiff dependency.
2020-01-06Add py-numpy 1.18.1 (#14406)Adam J. Stewart1-1/+2
2020-01-06r-snpstats: new package at 1.34.0 (#14404)Justin S1-0/+29
2020-01-06r-genetics: new package at 1.3.8.1.2 (#14403)Justin S1-0/+22
2020-01-06Add updated kaldi and openfst (#14398)Thom Troy2-0/+3
* add openfst v1.6.7 and kaldi from 2019-09-29 * revert openfst package version in url
2020-01-06Add singularity@3.5.2 (#14401)George Hartzell1-0/+1
2020-01-06Fastdfs (#14378)darmac1-0/+35
* add new package : fastdfs * refine install() * remove redundant fastdfs/fastdfs/package.py * fix install() error
2020-01-06py-ujson: new package at 1.35 (#14279)Justin S1-0/+18
* py-ujson: new package at 1.35 * py-ujson: use PyPI mirror, add missing deps * py-ujson: use short PyPI url
2020-01-06Fix QT on Linux+clang (#13684)Seth R. Johnson1-33/+56
* Add platform flag to QT for linux+clang * Extend QT platform support to more compilers and systems * Unify QT5 configure options * fixup! Unify QT5 configure options * fixup! Unify QT5 configure options * fixup! Unify QT5 configure options * Fix newer flake8 and mac qt5 configure
2020-01-06Nsimd: New package (#14226)Erik Schnetter1-0/+65
* Nsimd: New package * Various cleanups as suggested during review
2020-01-05Add py-thirdorder recipe (#12791)asmaahassan901-0/+37
* Add Thirdorder recipe * Remove white spaces * Converting recipe to a PythonPackage base class * remove trailing spaces * remove line at end of file * enhance recipe as per reviewer * fix post_install as requested by reviewer * rename dir to py-thirderorder * change checksum to sha256
2020-01-04Overhaul py-pillow package (#14385)Adam J. Stewart1-51/+54
* Overhaul py-pillow package * Fix bug where zlib and jpeg were always disabled
2020-01-04libwebp: CMakePackage -> AutotoolsPackage (#14384)Adam J. Stewart1-7/+49
2020-01-04Adjust constraints of gcc-5 (#14388)Glenn Johnson1-1/+2
This PR adjusts the constraints on isl with GCC-5. GCC-5.1 and GCC-5.2 need isl-0.14, not isl-0.15.
2020-01-04Add libs property to openjpeg package (#14383)Adam J. Stewart1-0/+5
2020-01-04Add libs property to lcms package (#14382)Adam J. Stewart1-0/+4
2020-01-04py-torchvision 0.4.X does not support py-pillow 7.X.Y (#14381)Adam J. Stewart1-1/+3
2020-01-04environment-modules: add version 4.4.1 (#14379)Xavier Delaruelle1-1/+2
2020-01-04add new package : lucene (#14316)darmac1-0/+28
* add new package : lucene * update lucene version url
2020-01-04add new package : kafka (#14315)darmac1-0/+35
* add new package : kafka * move url_for_version after depens_on() * refine list_depth for kafka
2020-01-04add new package : tajo (#14314)darmac1-0/+36
* add new package : tajo * refine list_depth for tajo
2020-01-03py-intervaltree: new package at 3.0.2 (#14277)Justin S1-0/+19
* py-intervaltree: new package at 3.0.2 * py-intervaltree: fix checksum * py-intervaltree: add py-setuptools dep * py-intervaltree: use inclusive ranges * py-intervaltree: change py-test dep type
2020-01-03petsc: add version 3.12.3 (#14374)Satish Balay1-0/+1
2020-01-03new package: bref3 (#14256)xfzhao2-0/+50
2020-01-02Get py-numpy > 1.16 to build with Intel compiler (#14360)Glenn Johnson1-0/+23
Beginning with numpy > 1.16 when using older versions of gcc the `std=c99` flag must be used. The Intel compiler depends on gcc for its language extensions so the version of gcc is important. If the version of gcc used by the Intel compiler is one that requires the `-std=c99` flag then that flag will have to be used for a build with the Intel compiler as well. This PR tests the version of gcc used by the Intel compiler and will abort the build if the gcc version is < 4.8 and inject the `-std=c99` flag if >= 4.8 and < 5.1. This will cover the system gcc compiler and any gcc environment module loaded at build time.
2020-01-02package/opencv fix mistake in conflict statement involving gcc (#13959)Sinan1-4/+1
* fix mistake in conflict * extend CudaPackage to resolve cuda-gcc conflicts
2020-01-02Updated version to include v3.0.1 (#14353)Jonathan R. Madsen1-0/+2
* Updated version to include v3.0.1 - this patch has a rather critical MT fix * Update package.py - Moved 3.0.1 above 3.0.0
2020-01-02fix url for mantevo packages (#14366)Christoph Junghans9-9/+9
2020-01-02Set preferred version of perl-bioperl (#14354)Glenn Johnson1-1/+3
Due to formatting differences, the older version of perl-bioperl was getting picked up as the preferred version. This PR explicitly sets the newer version to be preferred.
2020-01-02added verbose variant to mercury package (#14355)Matthieu Dorier1-0/+3
2020-01-02gromacs: depend on hwloc v1 (#14343)Gilles Gouaillardet1-1/+3
Because of a bug in the current concretizer, spack install gromacs fails because gromacs depends on hwloc (default is v2), and Open MPI (the default MPI library) depends on hwloc v1. As discussed in https://github.com/spack/spack/issues/14339, this workaround should be removed once the concretizer is fixed Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-01-02py-scikit-learn: add 0.22.1 (#14350)Adam J. Stewart1-0/+1
2020-01-02osu-micro-benchmarks: added version 5.6.2 (#14352)Mike Kiernan1-1/+2
2020-01-02new package: py-zarr (#14326)Sinan1-0/+25
* create package py-zarr * specify setuptools versions * add more dependencies, improve style * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zarr/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * add dependencies, remove python version constraint * remove windows specific dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-01-02MKL: set appropriate CMake env vars (#14274)Adam J. Stewart1-5/+0
2020-01-01new package: py-numcodecs (#14330)Sinan1-0/+25
* new package: py-numcodecs * make msgpack variant
2020-01-01py-numpy: add 1.17.5 (#14341)Adam J. Stewart1-0/+1
2019-12-31new package: py-msgpack (#14329)Sinan1-0/+17
* new package: py-msgpack * remove python dependency * remove cython dependency
2019-12-31Updated versions and more variants (#14310)Jonathan R. Madsen1-4/+43
* Updated versions and more variants - Added 'develop' and '3.0.0' versions - Added 'tau', 'upcxx', 'gotcha', and 'likwid' * Added conflict handling for +cupti~cuda * Removed extra cmake args line
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