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2023-05-10Create include/lib in prefix for oneapi packages (#37552)Robert Cohn4-2/+22
2023-05-10Stand-alone testing: make recipe support and processing spack-/pytest-like ↵Tamara Dahlgren8-15/+71
(#34236) This is a refactor of Spack's stand-alone test process to be more spack- and pytest-like. It is more spack-like in that test parts are no longer "hidden" in a package's run_test() method and pytest-like in that any package method whose name starts test_ (i.e., a "test" method) is a test part. We also support the ability to embed test parts in a test method when that makes sense. Test methods are now implicit test parts. The docstring is the purpose for the test part. The name of the method is the name of the test part. The working directory is the active spec's test stage directory. You can embed test parts using the test_part context manager. Functionality added by this commit: * Adds support for multiple test_* stand-alone package test methods, each of which is an implicit test_part for execution and reporting purposes; * Deprecates package use of run_test(); * Exposes some functionality from run_test() as optional helper methods; * Adds a SkipTest exception that can be used to flag stand-alone tests as being skipped; * Updates the packaging guide section on stand-alone tests to provide more examples; * Restores the ability to run tests "inherited" from provided virtual packages; * Prints the test log path (like we currently do for build log paths); * Times and reports the post-install process (since it can include post-install tests); * Corrects context-related error message to distinguish test recipes from build recipes.
2023-05-10squashfs-mount: add v0.4.0 (#37478)Alec Scott1-0/+1
2023-05-10shared-mime-info: add v1.10 (#37477)Alec Scott1-0/+1
2023-05-10kinesis: add v2.4.8 (#37476)Alec Scott1-0/+1
2023-05-10unifdef: add v2.12 (#37456)Alec Scott1-0/+1
2023-05-10conmon: add v2.1.7 (#37320)Alec Scott1-0/+1
2023-05-10runc: add v1.1.6 (#37308)Alec Scott1-0/+1
2023-05-10py-datalad: add 0.18.3 (#37411)Manuela Kuhn1-15/+31
* py-datalad: add 0.18.3 * [@spackbot] updating style on behalf of manuelakuhn * Remove metadata variant * Fix dependencies * Remove redundant version restriction
2023-05-09r-knitr: add v1.42 (#37203)Alec Scott1-4/+7
2023-05-09ssht: add v1.5.2 (#37542)Alec Scott1-0/+1
2023-05-09py-loguru: add v0.2.5, v0.3.0 (#37574)eugeneswalker1-0/+2
* py-loguru: add v0.2.5 * py-loguru: add v0.3.0
2023-05-09memkind: parallel = false (#37566)eugeneswalker1-0/+3
2023-05-09z-checker: add v0.9.0 (#37534)Alec Scott1-0/+1
2023-05-09hip: get_paths for hipify-clang (#37559)eugeneswalker1-1/+7
* hip: get_paths for hipify-clang * fix: need to actually use get_paths now to get hipify-clang path * set hipify-clang path differentluy for external vs spack-installed case * [@spackbot] updating style on behalf of eugeneswalker
2023-05-09gh: add conflict for v2.28.0 and macos (#37563)Alec Scott1-0/+2
2023-05-08breseq: add v0.38.1 (#37535)Alec Scott1-0/+1
2023-05-08exiv2: add v0.27.6 (#37536)Alec Scott1-0/+1
2023-05-08hazelcast: add v5.2.3 (#37537)Alec Scott1-0/+1
2023-05-08libjpeg-turbo: add v2.1.5 (#37539)Alec Scott1-0/+1
2023-05-08mlst: add v2.23.0 (#37540)Alec Scott1-0/+1
2023-05-08scitokens-cpp: add v1.0.1 (#37541)Alec Scott1-0/+1
2023-05-08delta: add v2.3.0 (#37545)Alec Scott1-0/+1
2023-05-08druid: add v1.2.8 (#37546)Alec Scott1-0/+1
2023-05-08fd-find: add v8.7.0 (#37547)Alec Scott1-0/+1
2023-05-08hpcviewer: add version 2023.04 (#37556)Mark W. Krentel1-0/+5
2023-05-08new package: psalg (#37357)eugeneswalker1-0/+23
* new package: psalg * use new maintainer syntax Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-08Add a "requires" directive, extend functionality of package requirements ↵Massimiliano Culpo6-26/+41
(#36286) Add a "require" directive to packages, which functions exactly like requirements specified in packages.yaml (uses the same fact-generation logic); update both to allow making the requirement conditional. * Packages may now use "require" to add constraints. This can be useful for something like "require(%gcc)" (where before we had to add a conflict for every compiler except gcc). * Requirements (in packages.yaml or in a "require" directive) can be conditional on a spec, e.g. "require(%gcc, when=@1.0.0)" (version 1.0.0 can only build with gcc). * Requirements may include a message which clarifies why they are needed. The concretizer assigns a high priority to errors which generate these messages (in particular over errors for unsatisfied requirements that do not produce messages, but also over a number of more-generic errors).
2023-05-08caliper +rocm: use hipcc for CMAKE_CXX_COMPILER (#35219)eugeneswalker1-0/+1
2023-05-08libmonitor: add version 2023.03.15 (#37434)Mark W. Krentel1-0/+1
2023-05-08Fix pixman macOS build and add missing build deps (#36982)Seth R. Johnson1-1/+9
2023-05-08trinity: adding version 2.15.1 (#37076)snehring2-0/+18
2023-05-08Add HPX 1.9.0 (#37426)Mikael Simberg1-1/+12
2023-05-07pkgconf: add v1.9.4 (#36437)Alec Scott1-0/+1
2023-05-07caliper +rocm: patch missing libunwind include dir (#37461)eugeneswalker2-0/+15
* patch missing libunwind include dir * caliper +libunwind +sampler: patch libunwind include dir
2023-05-07petsc@3.19.1 +rocm: conflicts with rocprim@5.3.0 (#37474)eugeneswalker1-0/+3
* petsc@3.19.1 +rocm: conflicts with rocprim@5.3.0 * conflict with rocprim@5.3.0:5.3.2 when +rocm
2023-05-07libtiff: add v4.5.0 (#37523)Alec Scott1-0/+1
2023-05-07libblastrampoline: add v5.8.0 (#37538)Alec Scott1-0/+1
2023-05-05libpcap: add v1.10.4 (#37451)Alec Scott1-0/+1
2023-05-05[elfutils] iconv is required (see ./configure --help) (#37464)Chris Green1-0/+1
2023-05-05Improve version, version range, and version list syntax and behavior (#36273)Harmen Stoppels22-35/+35
## Version types, parsing and printing - The version classes have changed: `VersionBase` is removed, there is now a `ConcreteVersion` base class. `StandardVersion` and `GitVersion` both inherit from this. - The public api (`Version`, `VersionRange`, `ver`) has changed a bit: 1. `Version` produces either `StandardVersion` or `GitVersion` instances. 2. `VersionRange` produces a `ClosedOpenRange`, but this shouldn't affect the user. 3. `ver` produces any of `VersionList`, `ClosedOpenRange`, `StandardVersion` or `GitVersion`. - No unexpected type promotion, so that the following is no longer an identity: `Version(x) != VersionRange(x, x)`. - `VersionList.concrete` now returns a version if it contains only a single element subtyping `ConcreteVersion` (i.e. `StandardVersion(...)` or `GitVersion(...)`) - In version lists, the parser turns `@x` into `VersionRange(x, x)` instead of `Version(x)`. - The above also means that `ver("x")` produces a range, whereas `ver("=x")` produces a `StandardVersion`. The `=` is part of _VersionList_ syntax. - `VersionList.__str__` now outputs `=x.y.z` for specific version entries, and `x.y.z` as a short-hand for ranges `x.y.z:x.y.z`. - `Spec.format` no longer aliases `{version}` to `{versions}`, but pulls the concrete version out of the list and prints that -- except when the list is is not concrete, then is falls back to `{versions}` to avoid a pedantic error. For projections of concrete specs, `{version}` should be used to render `1.2.3` instead of `=1.2.3` (which you would get with `{versions}`). The default `Spec` format string used in `Spec.__str__` now uses `{versions}` so that `str(Spec(string)) == string` holds. ## Changes to `GitVersion` - `GitVersion` is a small wrapper around `StandardVersion` which enriches it with a git ref. It no longer inherits from it. - `GitVersion` _always_ needs to be able to look up an associated Spack version if it was not assigned (yet). It throws a `VersionLookupError` whenever `ref_version` is accessed but it has no means to look up the ref; in the past Spack would not error and use the commit sha as a literal version, which was incorrect. - `GitVersion` is never equal to `StandardVersion`, nor is satisfied by it. This is such that we don't lose transitivity. This fixes the following bug on `develop` where `git_version_a == standard_version == git_version_b` does not imply `git_version_a == git_version_b`. It also ensures equality always implies equal hash, which is also currently broken on develop; inclusion tests of a set of versions + git versions would behave differently from inclusion tests of a list of the same objects. - The above means `ver("ref=1.2.3) != ver("=1.2.3")` could break packages that branch on specific versions, but that was brittle already, since the same happens with externals: `pkg@1.2.3-external` suffixes wouldn't be exactly equal either. Instead, those checks should be `x.satisfies("@1.2.3")` which works both for git versions and custom version suffixes. - `GitVersion` from commit will now print as `<hash>=<version>` once the git ref is resolved to a spack version. This is for reliability -- version is frozen when added to the database and queried later. It also improves performance since there is no need to clone all repos of all git versions after `spack clean -m` is run and something queries the database, triggering version comparison, such as potentially reuse concretization. - The "empty VerstionStrComponent trick" for `GitVerison` is dropped since it wasn't representable as a version string (by design). Instead, it's replaced by `git`, so you get `1.2.3.git.4` (which reads 4 commits after a tag 1.2.3). This means that there's an edge case for version schemes `1.1.1`, `1.1.1a`, since the generated git version `1.1.1.git.1` (1 commit after `1.1.1`) compares larger than `1.1.1a`, since `a < git` are compared as strings. This is currently a wont-fix edge case, but if really required, could be fixed by special casing the `git` string. - Saved, concrete specs (database, lock file, ...) that only had a git sha as their version, but have no means to look the effective Spack version anymore, will now see their version mapped to `hash=develop`. Previously these specs would always have their sha literally interpreted as a version string (even when it _could_ be looked up). This only applies to databases, lock files and spec.json files created before Spack 0.20; after this PR, we always have a Spack version associated to the relevant GitVersion). - Fixes a bug where previously `to_dict` / `from_dict` (de)serialization would not reattach the repo to the GitVersion, causing the git hash to be used as a literal (bogus) version instead of the resolved version. This was in particularly breaking version comparison in the build process on macOS/Windows. ## Installing or matching specific versions - In the past, `spack install pkg@3.2` would install `pkg@=3.2` if it was a known specific version defined in the package, even when newer patch releases `3.2.1`, `3.2.2`, `...` were available. This behavior was only there because there was no syntax to distinguish between `3.2` and `3.2.1`. Since there is syntax for this now through `pkg@=3.2`, the old exact matching behavior is removed. This means that `spack install pkg@3.2` constrains the `pkg` version to the range `3.2`, and `spack install pkg@=3.2` constrains it to the specific version `3.2`. - Also in directives such as `depends_on("pkg@2.3")` and their when conditions `conflicts("...", when="@2.3")` ranges are ranges, and specific version matches require `@=2.3.`. - No matching version: in the case `pkg@3.2` matches nothing, concretization errors. However, if you run `spack install pkg@=3.2` and this version doesn't exist, Spack will define it; this allows you to install non-registered versions. - For consistency, you can now do `%gcc@10` and let it match a configured `10.x.y` compiler. It errors when there is no matching compiler. In the past it was interpreted like a specific `gcc@=10` version, which would get bootstrapped. - When compiler _bootstrapping_ is enabled, `%gcc@=10.2.0` can be used to bootstrap a specific compiler version. ## Other changes - Externals, compilers, and develop spec definitions are backwards compatible. They are typically defined as `pkg@3.2.1` even though they should be saying `pkg@=3.2.1`. Spack now transforms `pkg@3` into `pkg@=3` in those cases. - Finally, fix strictness of `version(...)` directive/declaration. It just does a simple type check, and now requires strings/integers. Floats are not allowed because they are ambiguous `str(3.10) == "3.1"`.
2023-05-05apr: add v1.7.4 (#37445)Alec Scott1-0/+1
2023-05-05fms: add v2023.01 (#37450)Alec Scott1-0/+1
2023-05-05py-palettable: add 3.3.3 (#37443)Manuela Kuhn1-0/+1
2023-05-05hdf5: Add conflict for older cmake versions. (#37463)Mittagskogel1-0/+4
See HDFGroup/hdf5 issue 2906
2023-05-05phast: add v1.6 (#37455)Alec Scott1-0/+1
2023-05-05mmg: add v5.7.1 (#37453)Alec Scott1-0/+1
2023-05-05octave: add v8.2.0 (#37454)Alec Scott1-0/+1
2023-05-05logrotate: add v3.21.0 (#37452)Alec Scott1-0/+1
2023-05-05extrae: add v4.0.4 (#37449)Alec Scott1-0/+1