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2023-05-01beakerlib: add v1.29.3 (#37316)Alec Scott1-0/+1
2023-05-01kubectl: add v1.27.1 (#37330)Alec Scott1-0/+1
2023-05-01bedtools2: add v2.31.0 (#37301)Alec Scott1-0/+1
2023-05-01wsmancli: add v2.6.2 (#37351)Alec Scott1-0/+1
2023-05-01new package: py-lcls-krtc (#37263)eugeneswalker2-0/+38
* new package: py-lcls-krtc * new package: py-pykerberos * py-lcls-krtc: ^py-pykerberos for link
2023-05-01heaptrack: add v1.3.0 (#37327)Alec Scott1-0/+1
2023-05-01mixcr: add v4.3.2 (#37336)Alec Scott1-0/+1
2023-05-01c-blosc: add v1.21.2 (#37317)Alec Scott1-0/+1
2023-05-01nginx: add v1.24.0 (#37339)Alec Scott1-0/+1
2023-05-01alembic: add v1.8.5 (#37315)Alec Scott1-0/+1
2023-05-01tippecanoe: add v1.36.0 (#37313)Alec Scott1-0/+1
2023-05-01mpi-bash: add v1.3 (#37337)Alec Scott1-0/+1
2023-05-01petsc, py-petsc4py: add v3.19.1 (#37356)Satish Balay2-0/+2
2023-05-01Update py-editdistance@0.6.2 (#37365)Benjamin Meyers1-0/+8
* Update py-editdistance@0.6.2 * [@spackbot] updating style on behalf of meyersbs
2023-05-01console-bridge: add v1.0.2 (#37321)Alec Scott1-0/+1
2023-05-01dropwatch: add v1.5.4 (#37322)Alec Scott1-0/+1
2023-05-01flibcpp: add v1.0.2 (#37323)Alec Scott1-0/+1
2023-05-01helib: add v2.2.2 (#37328)Alec Scott1-0/+1
2023-05-01hunspell: add v1.7.2 (#37329)Alec Scott1-0/+1
2023-05-01procenv: add v0.60 (#37343)Alec Scott1-0/+1
2023-05-01restic: add v0.15.2 (#37345)Alec Scott1-0/+1
2023-05-01shapeit4: add v4.2.2 (#37347)Alec Scott1-0/+1
2023-05-01py-sphinx: add v7.0.0 (#37352)Adam J. Stewart1-0/+2
2023-05-01scons: add v4.5.2 (#37346)Alec Scott1-0/+1
2023-05-01Revert "new package: roentdek (#37265)" (#37355)eugeneswalker1-33/+0
This reverts commit fec20bb567af73fee6a796447fc19af65a0fc52f.
2023-04-29Feature/topiary (#37157)snehring13-0/+339
* generax: adding new package generax * muscle5: adding new package muscle5 * py-custom-inherit: adding new package py-custom-inherit * py-ete3: adding new package py-ete3 * py-itolapi: adding new package py-itolapi * py-opentree: adding new package py-opentree * py-pypng: adding new package py-pypng * py-toyplot: adding new package py-toyplot * py-toytree: adding new package py-toytree * py-pastml: adding new package py-pastml * raxml-ng: adding new version 1.1.0 * py-topiary: adding new package py-topiary * generax: adding master branch version generax: adding version 2.0.1 generax: add mpi variant * py-topiary: add main * generax: correcting commit for 2.0.1 * Update var/spack/repos/builtin/packages/py-itolapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-opentree/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-topiary-asr: rename package, requested changes. * Update var/spack/repos/builtin/packages/py-topiary-asr/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-29py-nipype: add 1.8.6 (#37279)Manuela Kuhn1-2/+4
* py-nipype: add 1.8.6 * Exchange test dep with skip_modules
2023-04-28new package: py-amityping (#37262)eugeneswalker1-0/+21
2023-04-28libmaxminddb: add v1.7.1 (#37185)Alec Scott1-0/+1
2023-04-28superlu-dist: do not discard cflags from Spack (#37260)Victor Brunini1-11/+14
Make sure to append additional flags needed for specific compilers in the flag_handler instead of adding them as separate cmake define lines that override the main spack cflags.
2023-04-28Fixing patch version constraint for llvm external ncurses patch (#37145)dale-mittleman1-2/+2
2023-04-28libxml2: fix test method (#37242)Massimiliano Culpo1-1/+1
This was discovered using #34236
2023-04-28new package: roentdek (#37265)eugeneswalker1-0/+33
2023-04-28new package: py-pyabel (#37264)eugeneswalker1-0/+22
2023-04-28new package: xtcdata (#37261)eugeneswalker1-0/+19
2023-04-28sentieon-genomics: adding new version 20211207. (#37223)snehring1-0/+1
2023-04-28kicad: new version 7.0.2 (#37228)Andrew W Elble3-1/+25
2023-04-28slurm: add version 22-05-8-1 and 23-02-1-1 (#37238)Richard Berger1-0/+2
2023-04-28py-psycopg2: add v2.9.6 (#37235)Adam J. Stewart1-5/+17
2023-04-28bricks: Fix package to properly find spack opencl-clhpp (#37239)John Jolly2-2/+22
The bricks package uses header from the opencl-clhpp package when built with the cuda variant activated. In order to find the header files, the bricks CMakeLists.txt uses the `find_package(OpenCL 2.0)` statement. The CMake FindOpenCL module searches several paths to find the header files. Eventually it will search for header files in the local /usr/include directories. If OpenCL headers are found, but CUDA is not installed locally, then the build will fail. One of the CMake variables searched for a path to the OpenCL headers is OCL_ROOT. This fix utilizes the OCL_ROOT variable to identify the correct path to the install opencl-clhpp package within Spack. Also, if the cuda variant is not used, then the OpenCL build is disabled to prevent a build failure due to improperly-identified locally-installed OpenCL header files. The default behavior of the build process has not changed. An external variable definitions must be made to activate these features. Specifically, to disable the OpenCL build, this flag must be provided to CMake: -DBRICK_USE_OPENCL=OFF The Spack build process explicitly uses this option unless the cuda variant is specified. If the cuda variant is specified, then the BRICK_USE_OPENCL variable is set to ON and the OCL_ROOT variable is set to the path of the opencl-clhpp include directory.
2023-04-28apfel: add v3.0.6 (#37267)Alec Scott1-0/+1
2023-04-28cmor: add v3.7.2 (#37268)Alec Scott1-0/+1
2023-04-28figtree: add v1.4.4 (#37269)Alec Scott1-0/+1
2023-04-28fping: add v5.1 (#37270)Alec Scott1-0/+1
2023-04-28gapbs: add v1.4 (#37271)Alec Scott1-0/+1
2023-04-28glfw: add v3.3.8 (#37272)Alec Scott1-0/+1
2023-04-28jemalloc: add v5.3.0 (#37273)Alec Scott1-0/+1
2023-04-28sandbox: add v2.25 (#37274)Alec Scott1-0/+1
2023-04-28snap-berkeley: add v2.0.3 (#37275)Alec Scott1-0/+1
2023-04-28tcpdump: add v4.99.4 (#37276)Alec Scott1-0/+1