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2017-09-18lammps: fix checksum (#5342)Christoph Junghans1-3/+7
2017-09-18Improve scorep package with different compilers and mpi providers (#5386)Pramod S Kumbhar1-3/+17
* Add --with-mpi=spec['mpi'].name at configure step to avoid error when finding 2 MPI implementations * Improve scorep package with different compilers and mpi providers
2017-09-18mesa: merge multiple branches into one (#5170)Milton Woods1-34/+102
Merge work from multiple contributors on the mesa package. This includes the following changes and decisions: * Added in mesa +hwrender support * make +swrender the default selection since this represents a very common usage case (ie, cluster usage) * leave ~llvm as the default, since inadvertently building this package could take a very long time. May need to revisit this assumption in the future since the performance difference can be quite substantial. * build libGLESv1+2 and libGL for all variants * avoid dependence on dri/libdrm when ~hwrender * disable gallium drivers if none are requested
2017-09-17Fix log error parsing bug introduced in c830eda0e (#5387)Todd Gamblin1-0/+49
- '\b' in regular expression needs to be in a raw string (r'\b') - Regression test that would've caught this was unintentionally disabled - This fixes the string and the test
2017-09-17tbb: add 2018 (#5359)Denis Davydov1-1/+2
2017-09-16Open MPI: add Open MPI 3.0.0 (#5360)Howard Pritchard1-1/+2
Open MPI 3.0.0 is released! Add to spack. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-09-16trilinos: update md5 for 12.10.1 (#5362)Denis Davydov1-1/+1
2017-09-16New Pcakage: numactl (#5371)Axel Huebl1-0/+39
Adds the numactl tools and libnuma.
2017-09-16Feature/methycode (#5374)ynanyam3-0/+123
* methylcode: added package * pyfasta: added package * py-bsddb3: added package * py-bsddb3: added package * Update package.py * Update package.py * Update package.py * removed fixme comments * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
2017-09-16Cntk: fixed dependency on protobuf fixes #5266 (#5267)Pramod S Kumbhar1-1/+1
As protobuf has been converted to CMakePackage, it doesn't have a 'shared' variant anymore.
2017-09-16augustus: url fix (#5311)Audrey Thoma1-2/+3
2017-09-16add Intel 2018 libraries (#5354)Denis Davydov4-0/+8
2017-09-16Bioawk: added new package (#5375)zenln1-0/+51
2017-09-16gromacs: added 2016.4 (#5376)Christoph Junghans1-0/+1
2017-09-15Update hpctoolkit and externals to latest releasePramod S Kumbhar2-8/+8
2017-09-15add new version to package py-pybind11healther1-0/+1
2017-09-15ncl: Fix buffer overflow in ymake-filter (#5357)Michael Kuhn2-0/+35
Fixes a problem in ymake-filter: The line buffer is currently hardcoded to be 2048 bytes large but some Makefiles contain lines longer than that. This caused the Makefiles to sometimes not be generated, consequently failing parts of the build.
2017-09-14Fix checksum of Intel TBB package (#5349)Pramod S Kumbhar1-1/+1
2017-09-14Added Support for NOX Package to Trilinos Spackage (#5366)Robert Pavel1-0/+4
Added support for building NOX package to Trilinis Spackage
2017-09-14ADIOS: Fix Build (Autotools) (#5363)Axel Huebl1-11/+23
This fixes the build of the ADIOS package. The `with_or_without` interface of the Autotools builds seems to have changed, this fixes it.
2017-09-14libsodium: update URLs (#5355)Axel Huebl1-1/+5
* libsodium: update URLs updates the URLs for libsodium releases. Fixes broken builds (404). * libsodium: add new version
2017-09-13Added missing dependencies to nauty package (#5348)Louis Vernon1-0/+2
* Added missing help2man dependency to nauty * Add type=build * Added gmp dependency to nauty package
2017-09-13Boost: 1.65.1 (#5330)Axel Huebl1-0/+2
Add sha of the latest boost bugfix release. http://www.boost.org/users/history/version_1_65_1.html Besides other fixed issues, it adds compatebility for the upcoming CUDA 9 release.
2017-09-12openblas: add ilp64 option (#5289)Denis Davydov1-0/+5
2017-09-11Update libbson and libmongoc to 1.7.0 (#5294)Michael Kuhn2-2/+29
This also introduces the ssl, snappy and zlib variants for libmongoc.
2017-09-11parsplice: initial commit (#5314)Christoph Junghans1-0/+48
2017-09-11dealii: explicitly specify bzip2 libs (#5337)Denis Davydov2-1/+12
* dealii: explicitly specify bzip2 libs * bzip2: add libs() property
2017-09-11'with_or_without' accepts bool variantsMassimiliano Culpo3-73/+51
Fixes #4112 This commit extends the support of the AutotoolsPackage methods `with_or_without` and `enable_or_disable` to bool-valued variants. It also defines for those functions a convenience short-cut if the activation parameter is the prefix of a spec (like in `--with-{pkg}={prefix}`). This commit also includes: * Updates to viennarna and adios accordingly: they have been modified to use `enable_or_disable` and `with_or_without` * Improved docstrings in `autotools.py`. Raise `KeyError` if name is not a variant.
2017-09-11added votca-1.4.1 modules (#5276)Christoph Junghans3-0/+5
2017-09-11elemental: fix broken Config.cmake (#5331)Denis Davydov2-0/+23
2017-09-11berkeley-db: initial commit (#5303)Christoph Junghans1-0/+47
* berkeley-db: initial commit * berkeley-db: added more versions
2017-09-11Added 'ldc' compiler for D language based on LLVM (#5279)Massimiliano Culpo2-0/+150
2017-09-10fix armadillo macro expansions (#5268)Stephen McDowell2-1/+14
* fix armadillo macro expansions - most compilers `#define linux 1` - armadillo does raw pasting of include directories in code - this means macro expansion of `linux-x86_64` -> `1-x86_64` - new version, previous download url seems broken - lib64 instead of lib? - needs verification, was required for intel, works for others * flake8: two spaces is modules, one for classes * add some explanation of how the patch works * use p1 patch file with -U0 to prepend undef linux * armadillo v8.100.1
2017-09-10Missing opencv dependencies (#5285)Eloy Gil1-1/+1
There are some opencv dependencies missing such as "core" that are mandatory in order to complete the caffe build.
2017-09-10add package py-line-profiler (#5291)healther1-0/+39
2017-09-10Change glog from Autotools to CMakePackage (#5323)Pramod S Kumbhar1-1/+4
2017-09-10lammps: version bump, switch to cmake (#5313)Christoph Junghans2-158/+52
2017-09-10latte: initial commit (#5315)Christoph Junghans1-0/+46
2017-09-10Fix Autotools build error due to missing m4 and MPICC/MPICXX (#5319)Pramod S Kumbhar1-0/+3
2017-09-10Chnage IOR to AutotoolsPackage; remove hard-coded mpicc path (#5318)Pramod S Kumbhar1-13/+15
2017-09-10Improve PDToolkit support for different compilers (#5322)Pramod S Kumbhar1-1/+14
* Improve PDToolkit support for different compilers PDT dependency of TAU profiler doesn't use CC, CXX eb variables and needs command line arguments for compiler identification. If we don't pass compiler id then it uses gcc and result in link time errors while building TAU. This patch fixes it; tested with PGI and Intel compilers.
2017-09-10Fix matplotlib build issue with intel compiler (#5321)Pramod S Kumbhar1-0/+5
2017-09-10Improve caffe dependency detection with extra CMake flags (#5328)Pramod S Kumbhar1-2/+14
* Improve caffe dependency detection with extra CMake flags * lmdb and leveldb fix
2017-09-10Paraview requires CMake version 3.3 or higher (#5317)Pramod S Kumbhar1-0/+1
2017-09-10Libgpuarray requires CMake 3.0 or higher (#5326)Pramod S Kumbhar1-0/+1
2017-09-09Fix caffe build issue with python 3 (#5324)Pramod S Kumbhar1-0/+4
2017-09-08Bootstrap environment-modulesMatthew Scott Krafczyk1-0/+5
Renames the existing bootstrap command to 'clone'. Repurposes 'spack bootstrap' to install packages that are useful to the operation of Spack (for now this is just environment-modules). For bash and ksh users running setup-env.sh, if a Spack-installed instance of environment-modules is detected and environment modules and dotkit are not externally available, Spack will define the 'module' command in the user's shell to use the environment-modules built by Spack.
2017-09-07mlhka: new package (#5231)Audrey Thoma1-0/+42
* mlhka: new package
2017-09-06Update copyright notices for 2017 (#5295)Michael Kuhn1822-1822/+1822
2017-09-06elemental: fix hardcode libgfortran, use develop and explicitly specify MPI ↵Denis Davydov1-2/+11
compilers (#5263)
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