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2018-02-11pybind11: 2.2.[1,2] & develop (#7216)Axel Huebl1-0/+4
Add the latest release of `pybind11` and its `develop` version.
2018-02-11Xtensor 0.15.1 (#7215)Axel Huebl3-4/+8
Add the latest xtensor release and its dependencies.
2018-02-09new package: diffsplice (#7187)Eric1-0/+41
2018-02-09hpgmg package: add debug option and new version (#7175)Jed Brown1-3/+13
This adds a static version of hpgmg (up to now only the latest commit from the master branch was available). This also adds a debug variant and sets optimization flags for ~debug when the compiler is gcc, intel, or clang
2018-02-09petsc: use spack-built python for configure (#7176)Jed Brown1-1/+1
Make sure to use Spack-built python to run petsc configure script (in particular since petsc requires python@2.6:2.8)
2018-02-09xbraid@2.2.0: new package (#7205)Geoffrey Oxberry1-0/+68
2018-02-09git-imerge@1.1.0: new package (#7203)Geoffrey Oxberry1-0/+62
2018-02-09py-checkm-genome: Create new package (#7200)Eric1-0/+43
2018-02-09fix petsc int64 metis dependencies (#7195)David Gardner1-4/+7
2018-02-09libSplash: 1.7.0 (#7199)Axel Huebl1-2/+18
Adds the latest release of libSplash (1.7.0) and newly learned CMake flags for explicit dependency control. Modifies HDF5 dependency: non-MPI splash does (and did) never run with a parallel HDF5, due to it's internal cross-dependencies on MPI.
2018-02-08comd: more sane default (#7046)Christoph Junghans1-1/+1
Avoid useless deps.
2018-02-06LIBXSMM 1.8.3 (#7183)Hans Pabst1-1/+2
2018-02-06samblaster: Create new package (#7188)Eric1-0/+40
2018-02-06py-localcider: Create new package (#7189)Eric1-0/+39
2018-02-06oclint: new package (#7076)Geoffrey Oxberry2-0/+99
2018-02-05angsd: new version, and conflict for newer htslib with old version (#7122)Levi Baber1-0/+2
2018-02-04Update fish url for fish 2.7.1 (#7089)Mark Meredith1-1/+2
2018-02-03Update Nek5000 package to Version 17 (#7178)Thilina Rathnayake1-14/+12
and minor polishing
2018-02-03highfive: Update to version 1.5 (#7041)Erik Schnetter1-0/+1
2018-02-03A new package: libcroco. (#7154)健美猫1-0/+37
2018-02-03macOS Fix for GDAL (#7155)Elizabeth Fischer1-6/+11
2018-02-03clingo@5.2.2: new package (#7091)Geoffrey Oxberry1-0/+54
2018-02-03stringtie: add version 1.3.4a (#7164)Eric1-0/+1
2018-02-02new package: perl-exporter-tiny (#7030)Eric1-0/+35
2018-02-01Efficient array of booleans, C extension (#7135)Feiyi Wang1-0/+37
2018-01-31lz4 platform=darwin: fix dylib name (#7112)Geoffrey Oxberry1-0/+6
2018-01-31libdwarf: fix linking, fix build on Darwin (#7124)Geoffrey Oxberry1-3/+31
* libdwarf: fix linker flags * libdwarf: fix header install names * libdwarf: add zlib dependency Prior to this commit, libdwarf was linked to the system zlib. This commit links it to spack-installed zlib. * libdwarf: fix dynamic library suffix for Darwin
2018-01-31symlink python3 to python (#7103)healther1-0/+6
* symlink python3 to python * otherwise not all autotools are smart enough * Update package.py
2018-01-31Added osu-micro-benchmarks@5.4 (#7149)sknigh1-0/+1
2018-01-31Adding support for the Accelerate library on OS X (#7068)Brian Van Essen1-2/+7
* Adding support for the Accelerate library on OS X * Fixed guard on variable and added another depends_on statement to make sure that openblas gets selected even when openmp_blas variant is not turned on.
2018-01-31fr-hit: Create new package (#7132)Eric2-0/+72
2018-01-31Protobuf fix (#7110)Brian Van Essen1-0/+8
* Fixed a bug where when using shared libraries OS X does not set the RPATH correctly
2018-01-31LBANN OS X (#7105)Brian Van Essen3-1/+34
* Added a package for the MDAnalysis toolkit. * Added some flags to fix the build RPATHs and OpenMP for LBANN on OS X. * Fixed Hydrogen branch of Elemental to find OpenMP on OS X.
2018-01-31py-setuptools-git: Create new package (#7131)Eric1-0/+37
2018-01-31PNGwriter: 0.7.0 (#7026)Axel Huebl1-0/+10
Adds the latest release of PNGwriter, including Windows and CMake config package support.
2018-01-31Added v1.4.2 to libfabric package (#7053)sknigh1-0/+1
2018-01-31abyss: added missing libtool dependency (#7054)Levi Baber1-0/+1
2018-01-31openPMD-validator (#7064)Axel Huebl1-0/+42
Adds the new package for openPMD validator tools.
2018-01-31ocaml@4.06.0: new version (#7078)Geoffrey Oxberry1-1/+6
2018-01-31re2c@1.0.3: new package (#7092)Geoffrey Oxberry1-0/+39
2018-01-31opam: new package (#7079)Geoffrey Oxberry1-0/+53
2018-01-31bmake@20171207: new package (#7099)Geoffrey Oxberry1-0/+51
2018-01-31gcc: add version 7.3.0 (#7097)Geoffrey Oxberry1-0/+1
2018-01-31lz4@1.8.1.2: new version (#7111)Geoffrey Oxberry1-0/+1
2018-01-31libarchive@3.3.2: new version (#7113)Geoffrey Oxberry1-0/+1
2018-01-31rtags: add 2.17 and for now comment-out 2.12 (#7126)Denis Davydov1-2/+3
2018-01-31maq: Create new package. (#7133)lingnanyuan1-0/+39
2018-01-29rna-seqc package: JAVA_{ARGS,OPTS} for helper script (#6972)Eric1-1/+1
2018-01-28Cleaned up JUnit report generation on install (#6977)Massimiliano Culpo1-0/+62
* Cleaned up JUnit report generation on install The generation of a JUnit report was previously part of the install command. This commit factors the logic into its own module, and uses a template for the generation of the report. It also improves report generation, that now can deal with multiple specs installed at once. Finally, extending the list of supported formats is much easier than before, as it entails just writing a new template. * Polished report generation + added tests for failures and errors The generation of a JUnit report has been polished, so that the stacktrace is correctly displayed with Jenkins JUnit plugin. Standard error is still not used. Added unit tests to cover for installation failures and installation errors.
2018-01-28libtool, binutils: fix darwin linking (#7073)Geoffrey Oxberry2-7/+12
* libtool: fix linking of libtool on darwin * binutils, libtool: fix conflicts w/ BSD tools, v2 Fix namespace conflicts with BSD tools in a more elegant fashion, using a program prefix, similar to Homebrew.
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