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2022-09-22New package: py-jaraco-classes (#32759)iarspider1-0/+22
* New package: py-jaraco-classes * Update var/spack/repos/builtin/packages/py-jaraco-classes/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22[py-tinydb] Added package py-tinydb (#32752)Matthieu Dorier1-0/+20
* [py-tinydb] added package py-tinydb * [py-tinydb] corrected version in dependency for py-tinydb * [py-tinydb] update python dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [py-tinydb] update dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22py-pytorch-lightning: add v1.7.7 (#32765)Adam J. Stewart1-0/+1
2022-09-22py-anyio: add 3.6.1 (#32756)Manuela Kuhn1-0/+1
2022-09-22Enable use of latest version of Octopus (12.0) (#32758)Hans Fangohr1-0/+1
Release notes: https://www.octopus-code.org/documentation/main/releases/octopus-12/
2022-09-22New package: cepgen (#32754)iarspider1-0/+30
2022-09-22GROMACS: update CMake version, and a couple more fixes (#32748)Andrey Alekseenko1-12/+11
- GROMACS is not an acronym (https://www.gromacs.org/about.html). - GROMACS switched to LGPL a long time ago, so let's mention it first. - CMake version required for `main` has been bumped to 3.18 (https://gitlab.com/gromacs/gromacs/-/merge_requests/3093) - `-DGMX_USE_OPENCL` flag was used before 2021; for newer versions, `-DGMX_GPU=OpenCL` is enough.
2022-09-21Add new variants (OPENCL and HIP) for MIVisionX recipe and their ↵Sreenivasa Murthy Kolam1-40/+84
dependencies correctly. (#32486) * add the 2 variants OPENCL and HIP and their dependencies correctly for OPENCL - rocm-opencl, miopengemm and miopen-opencl for HIP - miopen-hip Earlier this was adding both the dependencies -miopen-hip and miopen-opencl for both the backends which did not seem correct. Also corrected the miopen-hip or miopen-opencl config.h in patch() depending on the backend Also added libjpeg-turbo as it is required for building ROCAl . the AMDRpp is still required for ROCAL inclusion but it currently does not build AMDRpp will be added as a new spack recipe and the mivisionx will refer to that as a dependency in future. * fix style errors * bump up the version for 5.2.3 release. tested +opencl, +hip and ~hip~opencl(cpu backend) Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21Update the version details for rccl, rvs, rocm-tensile rocm-5.2.3 release ↵renjithravindrankannath4-6/+40
(#32741) * ROCm 5.2.3 release changes * Patch file for rccl Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21Update the version details for rocm-5.2.3 release (#32733)Sreenivasa Murthy Kolam43-46/+146
* Bump up the version for rocm-5.2.3 release * revert miopen-hip till the tag for mlirmiopen for 5.2.3 is available
2022-09-21Spackage for mlperf's OpenCatalyst (#32553)Robert Pavel8-0/+79
* Initial opencatalyst proxy app spackage Initial spackage for opencatalyst proxy app. Includes exposing of versions in dependency spackages * Verified Functionality and Spack Style Verified build of mlperf-opencatalyst and fixed lingering spack style issues * Making requested changes to py-ocp Making requested changed to spackage * Further Requested Changes
2022-09-21flux-core: add v0.43.0 (#32744)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21flux-sched: add v0.24.0 (#32743)Vanessasaurus1-1/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21py-bleach: add 5.0.1 (#32727)Manuela Kuhn1-2/+4
2022-09-21vgm: add v5-0 (#32742)Laurent Aphecetche1-0/+1
2022-09-21dolfinx: fix depends_on directive missing a version (#32730)Garth N. Wells1-1/+1
2022-09-20pango: harfbuzz+coretext required on macOS (#32637)Adam J. Stewart2-0/+18
2022-09-20New python package support: py-river (#32718)Paulo Baraldi Mausbach1-0/+28
2022-09-20cmake: add v3.24.1 and v3.24.2 (#32654)John W. Parent1-0/+3
2022-09-20gaudi: @:36 fails to build with fmt@9: (#32699)Wouter Deconinck1-0/+1
Since fmt@9.0.0 and 9.1.0 were [added](https://github.com/spack/spack/commit/6c4acfbf83372f76fe69aa7b959f257b6a1e8410) to spack a few days ago, gaudi fails to compile with default concretization. Since gaudi developers are usually paying attention to new versions of dependencies, I'm going to assume (perhaps optimistically) that the next bugfix version of gaudi will fix this (even though the issue has not been reported yet to Gaudi; I posted on the [key4hep public mirror](https://github.com/key4hep/Gaudi/issues/1)).
2022-09-20helics: Add version 3.3.0 (#32682)HELICS-bot1-0/+1
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com> Co-authored-by: Ryan Mast <3969255+nightlark@users.noreply.github.com>
2022-09-20variorum: new versions 0.5 and 0.6, remove log option (#32731)Stephanie Labasan Brink1-6/+2
2022-09-20Add fixed version 0.7.0 to cpu-features (#32726)iarspider1-0/+2
* Add fixed version 0.7.0 to cpu-features * [@spackbot] updating style on behalf of iarspider Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-09-20Update EVE to 2022.09 (#32729)Joel Falcou1-2/+3
2022-09-20new version (py-multiqc v1.13) + new package (py-rich-click) (#32719)Luke Diorio-Toth2-7/+42
* started updating multiqc package * working now * added py-rich-click * fixed style * changed py-matlibplot versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-networkx versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-coloredlogs versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed python versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-markdown versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-pyyaml requirement Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-requests requirements Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * changed py-spectra requirements Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-20py-python-gitlab: add 3.9.0 (#32723)Manuela Kuhn1-1/+3
2022-09-20py-annexremote: add 1.6.0 (#32725)Manuela Kuhn1-1/+3
2022-09-20py-pybids: add 0.15.3 (#32722)Manuela Kuhn1-0/+2
2022-09-20py-nibabel: add 4.0.2 (#32721)Manuela Kuhn1-0/+5
2022-09-20osu-micro-benchmarks: add v6.1 (#32692)natshineman1-1/+2
2022-09-20must: fix incorrect cmake argument (#32671)Jim Galarowicz1-1/+1
2022-09-20intel-oneapi-itac: remove UTF-8 character in docstringMassimiliano Culpo1-1/+1
This character causes random failures in CI for Python 2.7
2022-09-20Add checksum for py-nbconvert 6.5.1 (#32646)iarspider1-0/+2
2022-09-20py-h5py: add v3.7.0 (#32578)Jen Herting1-0/+1
2022-09-20py-bids-validator: add 1.9.8 (#32712)Manuela Kuhn1-0/+1
2022-09-20stat: add v4.2.1 (#32691)Gregory Lee1-2/+8
2022-09-19Bump up the version for rocm-5.2.1 release (#32195)Sreenivasa Murthy Kolam49-16/+294
* Bump up the version for rocm-5.2.1-initial commit * Bump up the version for rocm-5.2.1 release * Bump up the version for rocm-5.2.1 release * correct the PROF_API_HEADER_PATH to include * Bump up the version of rocm-openmp-extras for rocm-5.2.1 release * bump up the version of rocwmma for 5.2.1
2022-09-19add pio2_5_9 to spack package (#32716)Jim Edwards1-0/+1
2022-09-19py-pandas: add v1.5.0 (#32714)Adam J. Stewart1-1/+4
2022-09-19Added variant to ensure Arm Forge license acceptance (#32635)kent-cheung-arm1-2/+23
* Added variant to ensure Arm Forge license acceptance * Update var/spack/repos/builtin/packages/arm-forge/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19imagemagick: new variant ghostscript (#32450)Wouter Deconinck1-4/+12
* imagemagick: new variant ghostscript Ghostscript adds about 75 dependencies to an installation of imagemagick (97 without, 172 with Ghostscript). This adds a variant (defaulting to true for backward compatibility) that allows users to turn off Ghostscript support. * imagemagick: be explicit when `--with-gslib` * imagemagick: fix suggestion fail * imagemagick: use spec.prefix.share.font * imagemagick: default ghostscript false * imagemagick: no need for join_path anymore Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19Deprecate Python 2 support (#32615)Adam J. Stewart1-43/+211
This PR deprecates using Spack to install [EOL Python versions](https://endoflife.date/python), including Python 2.7, 3.1–3.6. It also deprecates running Spack with Python 2.7. Going forward, we expect Spack to have the following Python support timeline. ### Running Spack * Spack 0.18 (spring 2022): Python 2.7, 3.5–3.10 * Spack 0.19 (fall 2022): Python 2.7 (deprecated), 3.6–3.11 * Spack 0.20 (spring 2023): Python 3.6–3.11 ### Building with Spack * Spack 0.18 (spring 2022): Python 2.7, 3.1–3.10 * Spack 0.19 (fall 2022): Python 2.7, 3.1–3.6 (deprecated), 3.7–3.11 * Spack 0.20 (spring 2023): Python 3.7–3.11 This is a reboot of #28003. See #31824 for a detailed discussion of the motivation for this PR. If you have concerns about this change, please comment on #31824.
2022-09-19py-datalad: add 0.17.5 (#32676)Manuela Kuhn6-35/+115
* py-datalad: add 0.17.5 * Fix description of py-types-urllib3 * Update var/spack/repos/builtin/packages/py-datalad/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-datalad/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add colorama dependency for windows * Fix importlib-metadata dependency * Update var/spack/repos/builtin/packages/py-pytest/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pytest/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pytest/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Use conflict to avoid dependency duplication Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-19NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)rsanthanam-amd1-3/+3
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build. In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19Adding intel-oneapi-itac package (#32658)Stephen Sachs1-0/+42
* Adding intel-oneapi-itac package * Make black happy * add rscohn2 as maintainer * black prefers double quotes Co-authored-by: Stephen Sachs <stesachs@amazon.com> Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19Ginkgo: improve smoke testing (#32647)Terry Cojean1-14/+52
* Ginkgo: improve smoke testing * Fix style issues * Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19patch etsf-io tests (#32666)Ashwin Kumar3-0/+59
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19root: determine_variants cxxstd=20 support (#32673)Wouter Deconinck1-0/+2
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19fasttree: updating to 2.1.11 (#32683)snehring1-0/+7
2022-09-19py-sip: add v6.6.2 (#32695)Adam J. Stewart1-2/+7
* py-sip: add v6.6.2 * Fix python deptype
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