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2022-04-27orthofinder: add version 2.5.4 (#30344)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27Kokkos: update package for release 3.6.00 (#30315)Luc Berger1-1/+2
2022-04-27mvapich2 MPI_ROOT needed in modules (#30335)Paul Ferrell1-0/+2
We've found that when using mvapich2 via modules, we need to set the MPI_ROOT environment variable.
2022-04-27Update ascent and deps for 0.8.x (#29954)kwryankrattiger7-49/+372
* Update package versions for Ascent/SDK * Umpire build static for cuda from dray * Propagate cuda_arch for ascent and dray packages. * Ascent: Update dependency versions for ascent@0.8: * VTK-h: Patch +shared+cuda for VTK-h 0.8.x * Ascent: Patch to allow @0.8: +shared+cuda * Turn off building ascent tests. * Update ascent patch * WIP: Ascent: Update patch to configure MPI build with CUDA * Ascent: Tests require vtk-m+testlib * WIP: Ascent: Constrain 0.7 for vtk-h * Ascent: Directly depend on VTK-m
2022-04-27Mesa: Constrain compatible LLVM version (#30102)kwryankrattiger1-0/+1
Base on release date, not actual compatibility, because LLVM version compatibility is not documented clearly in Mesa for upper version limits.
2022-04-27SCons: added versions 4.0.0-4.3.0 (#30296)Lucas Frérot1-2/+19
* SCons: added versions 4.0.0-4.3.0 * scons: correct package name casing in url_for_version
2022-04-27Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains (#30318)Brian Van Essen1-0/+4
2022-04-27damask-*: add v3.0.0alpha6 (#30124)Martin Diehl4-11/+22
2022-04-27blat: add v37 (#30166)snehring1-1/+14
2022-04-27rust: add 1.60.0 and fix libgit2 incompatibility (#30123)Michael Kuhn1-0/+9
2022-04-27Added GPTune v3.0.0 and its dependency py-pymoo (#30119)liuyangzhuan2-1/+26
2022-04-27tauola: fix ~lhapdf (#30190)Valentin Volkl1-2/+7
2022-04-27Add fix for binutils 2.38 +gas makeinfo issue (#30209)Derek Ryan Strong1-0/+3
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27Starpu and Fxt: new packages (#29285)nfurmento2-0/+206
2022-04-27openmpi: add toggle for rsh plm (#30251)Harmen Stoppels1-1/+6
By default `openmpi` needs `rsh` from `openssh`, which is a somewhat redundant dependency for clusters using slurm. This PR adds a toggle to allow users to disable the ssh/rsh plm altogether.
2022-04-27gcta: rework package recipe (#30286)snehring2-10/+85
2022-04-27py-pil: deprecate package (#30308)Adam J. Stewart1-1/+1
2022-04-27relion: add altcpu variant and fix fftw (#30097)Glenn Johnson1-16/+53
This package was not setting FFTW when +mklfft was used with +cuda. Since both were set to 'True', the default build was not linked to any FFTW, leading to a run time error. It seems MKL support was conflated with alternative CPU acceleration support. This PR does the following: - adds the altcpu variant to specify non-GPU/CPU acceleration - sets a conflict between +altcpu and +cuda - sets an FFTW implementation - sets fltk+xft when +gui to get a decent looking GUI interface - sets tbb dependency only when +altcpu - adds dependency on ctffind - adds variant and dependency on motioncor2 - sets defaults for - qsub template location - ctffind location - motioncor2 location Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27bucky: fix compile errors with newer gccs (#30314)snehring1-2/+10
2022-04-27reprimand: update requests on boost (#30109)Erik Schnetter1-1/+1
2022-04-27suntans: add new package (#30149)Lhxone1-0/+46
2022-04-26py-cryptography@35: tell cargo to use cli git, not cargo internal git… ↵eugeneswalker1-0/+10
(#30307)
2022-04-26libgit2: add 1.4.3 and 1.3.1 (#30122)Michael Kuhn1-0/+2
2022-04-27fossil: New package (#30311)Erik Schnetter1-0/+25
* fossil: new package * fossil: Format code
2022-04-26Feature: Allow re-use of run_test() in install_time_test_callbacks (#26594)Tamara Dahlgren2-0/+58
Allow re-use of run_test() in install_time_test_callbacks Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-04-27New package: CaNS (#30218)Lhxone1-0/+45
2022-04-26hadoop: Update url and add version 3.3.2 (#29812)haralmha1-1/+2
* hadoop: Update url and add version 3.3.2 * Update url
2022-04-26arrow: Add version 7.0.0 (#29962)haralmha1-0/+1
2022-04-26New package: Swan (#30217)Lhxone1-0/+40
2022-04-26gnuplot: Add version 5.4.3 and add workaround for not found DSO (#30163)haralmha1-0/+2
2022-04-26Add g2tmpl versions 1.10.2 and 1.10.1 (#30202)Kyle Gerheiser1-0/+2
2022-04-26Power9 build fix for ctffind4 (#30300)John Hodrien2-0/+17
Only tested against the latest version, which is why it only applies the patch when using 4.1.14. Fix comes from: https://grigoriefflab.umassmed.edu/forum/software/ctffind_ctftilt/installing_ctffind_4114_ibm_power9
2022-04-26EVE now use main instead of develop as main branch (#30220)Joel Falcou1-1/+1
2022-04-26intel-xed: add version 2022.04.17 (#30239)Mark W. Krentel2-3/+17
1. Add version 2022.04.17 (new numbering scheme) and update mbuild resource. 2. Branch 'master' is now 'main'. 3. Old rev 10.2019.03 needs a patch for python vs python3.
2022-04-26Add NCIO v1.1.0 (#30306)Kyle Gerheiser1-0/+1
See release notes https://github.com/NOAA-EMC/NCEPLIBS-ncio/releases/tag/v1.1.0
2022-04-26Add checksum for py-ipywidgets@7.7.0 (#30155)Andrea Valenzuela2-1/+5
* Add checksum for py-ipywidgets@7.7.0 * Correct py-widgetsnbextension and py-ipython dependencies * Update widgetsnbextension dependency to 3.6 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Allow requirement to next versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Revert ipyhton dependencies * Add widgetsnbextension@3.6.0 checksum Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-26thrust: added version 1.12.1-1.16.0 (#30292)Lucas Frérot1-0/+6
2022-04-26py-uvw: updated versions (#30297)Lucas Frérot1-0/+4
2022-04-26opendatadetector: add new package (#30298)Valentin Volkl1-0/+36
* opendatadetector: add new package * style * opendatadetector: add hep tag
2022-04-26ginkgo: fix stand-alone test directory / install_test (#28412)Tamara Dahlgren1-3/+11
2022-04-26exabayes: specify c++11 (#30282)snehring1-0/+6
2022-04-26boost: update list of modules (#30104)Erik Schnetter1-5/+28
Co-authored-by: Tim Haines <thaines.astro@gmail.com>
2022-04-26spfft: pass cuda_arch to cmake (#30295)Simon Pintarelli1-0/+4
2022-04-26express: specify patch version range (#30283)snehring1-2/+2
2022-04-26googletest: change "master" to "main" (#30285)H. Joe Lee1-1/+1
There's no master branch on GitHub for googletest.
2022-04-26snpeff: change jdk dependency to java (#30048)dlkuehn1-1/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-26apex: add v2.5.1 (#30287)Kevin Huck1-0/+1
2022-04-26hiop: add v0.6.1, add new variant "cusolver" (#30288)Asher Mancinelli2-2/+7
2022-04-26glib: add 2.72.1 and 2.70.5 (#30274)Michael Kuhn1-2/+4
2022-04-26gawk: drop gettext by default (#30290)Harmen Stoppels1-1/+6
Reduces the number of packages to bootstrap gcc (which actually has --disable-nls).
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