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2018-11-13Fix pkg-config dependencies (#9738)Michael Kuhn4-4/+4
Replace dependencies on specific pkgconfig implementation (e.g. pkgconf) with dependency on pkgconfig virtual package
2018-11-12gplates package: improvements (#9735)Michael Kuhn1-6/+4
- Add version 2.1.0 - Now that #9264 has been merged, gplates seems to build fine with newer versions of gcc (tested with gcc@8) - When using the ninja generator, gplates can be built in parallel
2018-11-12Add 'pic' variant to netcdf packages (#9605)Alberto Chiusole3-6/+27
2018-11-12TALASS package: replace old version with new version (#9703)Peer-Timo Bremer1-1/+1
New version has bug fixes
2018-11-12libMesh: new version and dependency updates (#9709)Manav Bhatia1-1/+13
* added v1.3.1 checksum * added vtk and petsc variants * bugfix: enable petsc when slepc variant is specified
2018-11-12Open MPI: add versions 3.1.3, 3.0.3, update checksums (#9734)Daniel Topa1-18/+21
All checksums are now sha256
2018-11-12pkgconf: Add 1.5.4 (#9737)Michael Kuhn1-0/+1
2018-11-12chrpath: add new package (#9708)Matthias Diener1-0/+16
2018-11-12version/dependency updates for ilmbase and openexr (#9714)Phil Tooley2-16/+35
* include zlib dependency for openexr, fixes #7274 * version bump to openexr/ilmbase 2.3.0
2018-11-12new package: flatcc (#9695)Cameron Stanavige1-0/+46
2018-11-12nlohmann-json: add new version 3.4.0 (#9692)Axel Huebl1-0/+1
2018-11-12py-numba: update dependencies and versions (#9706)Ross Miller2-4/+15
The latest version of py-numba (0.40.1) wants a newer version of py-llvmlite. Had to add that version to py-llvmlite/package.py.
2018-11-12migrate: new package starting at 3.6.11 (#9707)Justin Stanley1-0/+71
2018-11-12new package: PyH5glance (#9700)Sinan1-0/+22
2018-11-12new package: python htmlgen (#9699)Sinan1-0/+24
2018-11-12gnuplot: add X11 dependency and QT terminal (#9722)Denis Davydov1-3/+32
2018-11-12r-manipulatewidget: new package at 0.10.0 (#9826)Justin Stanley1-0/+28
2018-11-12r-webshot: new package at 0.5.1 (#9824)Justin Stanley1-0/+20
2018-11-12r-callr: adding new dependencies (#9730)Levi Baber1-0/+5
2018-11-12r-convevol: new package at 1.3 (#9767)Justin Stanley1-0/+22
2018-11-12r-miniui: new package at 0.1.1.1 (#9823)Justin Stanley1-0/+20
2018-11-12r-clustergeneration: new package at 1.3.4 (#9765)Justin Stanley1-0/+18
2018-11-09Update Dyninst package file for TBB dependency (#9728)Jim Galarowicz5-7/+12
* Update Dyninst package file for TBB dependency Dyninst master and 10.0 release versions require the tbb package. This mod updates the tbb versions adding the one that dyninst uses and adds the required spack package changes to dyninst/package.py. * Put new version of tbb in proper location, per reviewer comment. * Only depend on tbb if building the development version. * Changes for the release of Dyninst 10.0.0
2018-11-09Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618)Nichols A. Romero2-0/+4
* Introduce FFTW2 and FFT3 providers for Intel-MKL and FFTW Spack packages. * make fftw default package for fftw-api virtual package * virtual package test assertion now provides location of default virtual packages. * Change name of virtual package to fftw-api and used versioned interface.
2018-11-09utils: merge spack.environment into spack.util.environmentTodd Gamblin3-3/+3
- `spack.util.environment` is the new home for routines that modify environment variables. - This is to make room for `spack.environment` to contain new routines for dealing with spack environments
2018-11-08canu: use built-in makefile install (#9726)Justin Stanley1-11/+3
2018-11-08muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake (#9724)Denis Davydov2-4/+27
* muparser: minor fixes to 2.2.5 and add 2.2.6 with CMake * dealii: make muparser optional
2018-11-08ncl: Add 6.5.0 (#9736)Michael Kuhn1-3/+4
2018-11-07r-delayedarray: new dep in latest vers (#9731)Levi Baber1-0/+1
2018-11-07Use the raw compiler path for the preprocessing pass in CLAW driver (#9748)Valentin Clement (バレンタイン クレメン)1-0/+3
2018-11-06New repo for advanced packaging tutorial (#9711)Peter Scheibel13-0/+947
* modified tutorial packages * update hint in hdf5 tutorial file (typo for suggested argument) * add repo.yaml to tutorial repository * update tutorial docs to refer user to tutorial package repository * flake edits * recommend site scope vs. defaults * you don't specify the repo's name when adding a repo, just the path
2018-11-06snpeff: add wrapper for SnpSift.jar (#9674)Levi Baber2-14/+21
2018-11-06Add OpenMPI 3.1.3 and a bug patch (#9680)sknigh2-0/+33
2018-11-05py-backports-functools-lru-cache: add to 'backports' namespace (#9720)Gregory Lee1-0/+2
2018-11-02new package: homer (starting at 4.9.1) (#9669)Justin Stanley1-0/+48
2018-11-02freetype: enable-freetype-config build option for 2.9.1 (#9653)Eric1-1/+4
This builds the 'freetype-config' binary which can be used to get configuration information about the freetype install, used by some dependents.
2018-11-02Add version 2.0.2 of BookLeaf_Cpp and version 3.0.2 of Typhon. (#9662)Tim Law2-0/+3
2018-11-01henson: new package (#9657)Dmitriy1-0/+38
* henson: new package * henson: change github path to henson-insitu * henson: make mpi-wrappers=off by default * henson: remove unsued variable and spaces to make linter happy * henson: rename version master to develop
2018-10-31xeus: new package (#9682)Thomas Stitt6-5/+113
* xeus: new package cppzmq: add version 4.3.0 zeromq: make libsodium optional, on by default * xeus: add patch so it builds, add new version nlohmann-json: add more versions cryptopp: add more versions * xeus: flake8 * xeus: fix license
2018-10-31ecp-proxy-apps: disable building CANDLE Benchmarks by default (#9691)Abhinav Bhatele1-2/+5
add as a variant
2018-10-31lbzip2: add new package (#9688)Federico Ficarelli1-0/+16
2018-10-31Provide a newer doxygen version. (#9681)Kelly (KT) Thompson2-0/+32
* Provide a newer doxygen version. + Also provide a patch that allows collaboration diagrams to work properly with C++ std::shared_ptr<T>. Ref: https://github.com/Sleepyowl/doxygen/commit/6c380ba91ae41c6d5c409a5163119318932ae2a3?diff=unified
2018-10-31Packmol: a new package. (#9687)健美猞猁1-0/+16
2018-10-31r-dismo: new package starting at 1.1-4 (#9675)Justin Stanley1-0/+21
2018-10-30Update openspeedshop and cbtf-krell module creation code (#9234)Jim Galarowicz7-112/+148
* Add the setting of CBTF_MPI_IMPLEMENTATION to the cbtf-krell and openspeeedshop package files, so that the mpi implementation can be found by the tool. This allows users to not have to set this manually if only one mpi implementation is specified in the build. * Update version ranges for dependencies of cbtf packages
2018-10-30Update dependencies for py-llvmlite (#9668)Ross Miller1-1/+1
Change dependency on llvm from >=6.0 to 6.0:6.99. Refs #9667
2018-10-30New package: RegCM, regional climate model. (#9655)Alberto Chiusole1-0/+73
2018-10-30GCC: ISL and mpfr upper bounds (#9513)Axel Huebl2-6/+14
* GCC: constrain version 6, 7, and 8 to build with ISL version at most 0.18 * GCC version 9 (not yet released) will be compatible with ISL version 0.20 so future GCC releases are constrained to build with ISL version at most 0.20 * ISL: Add v0.15, replace all md5 sums with sha256 sums for ISL versions * GCC versions before 6 were constrained to build with ISL 0.14 but have been confirmed to work with ISL 0.15 * GCC: Place an upper bound on GCC's mpfr dependency
2018-10-30vtk: remove redundant option setting (#9597)Ruben Di Battista1-7/+0
This eliminates duplicates for a couple options which are set multiple times.
2018-10-30caliper: specify path to libunwind (#9670)Abhinav Bhatele1-0/+2