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2022-03-29Support DASK backend in XARRAY. (#29726)Nichols A. Romero1-0/+2
* Support DASK backend in XARRAY. * Create XARRAY parallel variant with correct py-dask dependency.
2022-03-29Update cgns for new release (#29709)MicK71-1/+2
Add CGNS 4.3.0 version
2022-03-29ExaGO: add v1.4.0 and v1.4.1 (#29712)Asher Mancinelli2-29/+85
* ExaGO: Handling of cuda architectures and amdgpu targets changed to effectively handle multiple targets. See #28441. * Add ROCm support to ExaGO and update ROCm support in HiOp * ExaGO+rocm requires HiOp+rocm * Newer versions of CMake may set HIP_CLANG_INCLUDE_PATH incorrectly: add comments to the ExaGO/HiOp packages explaining how to address this problem if it occurs.
2022-03-29cgns: add v4.3.0 (#29773)Greg Sjaardema1-0/+1
2022-03-29mochi-margo: add v0.9.8 (#29771)Matthieu Dorier1-0/+1
2022-03-29SUNDIALS: refactor CMake recipe (#29585)Seth R. Johnson1-181/+95
- Use define/define_from_variant - Remove unused "fortran_flags" - Fix CUDA architectures when using multiple (needs semicolon not comma separators) - Add `when=` variant restrictions to simplify logic
2022-03-28cuda: add 11.6.2 (#29756)Carlos Bederián1-0/+4
2022-03-28Convert git-over-ssh package URLs to canonical format (#29754)Thomas Dickerson3-3/+3
Use canonical SSH urls for git-over-ssh package urls. See also: discussion on #29706, #29749, and https://forum.gitlab.com/t/provided-ssh-url-is-in-the-wrong-format/14320
2022-03-28spiner: fix +cuda (#29758)Richard Berger1-2/+2
2022-03-28New package: spiner (#29719)Richard Berger1-0/+77
* New package: spiner * Update dependencies for spiner package * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Remove versions that can't be installed and use ports-of-call@1.1.0 Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-28survey package: add versions 1.0.2/1.0.3; add tls model variant (#29375)Jim Galarowicz1-3/+16
2022-03-28ports-of-call: new version 1.1.0 (#29723)Richard Berger1-2/+2
Version 1.0.0 was uninstallable.
2022-03-28batchedblas: new package (#29028)FJ-NaokiMatsumura2-0/+52
2022-03-28gpi-space: add v22.03 (#29736)Max Zeyen1-0/+1
2022-03-28Adding NVIDIA HPC SDK 22.3 (#29737)Filippo Spiga1-0/+4
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2022-03-28julia: add patch reverting llvm rpath changes (#29731)Harmen Stoppels2-0/+35
2022-03-28julia 1.6/1.7: constrain libgit2, libssh2 (#29728)Harmen Stoppels1-4/+8
2022-03-27py-torch: fix to build with fujitsu-ssl2 (#29283)FJ-NaokiMatsumura8-0/+544
* py-torch: fix build with fujitsu-ssl2 * fix to use fujitsu-ssl2 in py-torch v1.5.0 to v1.11.0 * fix to use fujitsu-ssl2 in py-torch v1.2.0 to v1.11.0 * Delete fj-ssl2.patch * renamed the patches * Rename fj-ssl2.1.5.patch to fj-ssl2_1.5.patch * Delete fj-ssl2_1.5.patch
2022-03-27mochi-thallium: new package (#29722)Matthieu Dorier1-0/+60
2022-03-27h5z-zfp: fix build when ^hdf5+mpi (#29733)David M. Rogers1-3/+9
2022-03-27openmpi: switch to using main (#29725)Howard Pritchard1-8/+8
The Open MPI project has elected to name our development branch - main. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-03-26py-torchvision: adjust jpeg dependency (#29614)Glenn Johnson1-1/+1
2022-03-26llvm: add @14.0.0 (#29732)eugeneswalker1-0/+2
* llvm: add @14.0.0 * llvm@14 provides virtual
2022-03-25r-rsqlite: add v2.2.10 (#29624)Glenn Johnson1-0/+2
2022-03-25[julia] gfortran patch required for 1.7.2 (#29720)Jen Herting1-1/+1
2022-03-25Update rocm recipes for rocm-5.0.0 release (#29269)Sreenivasa Murthy Kolam48-109/+529
* update rocm recipes for ROCm-5.0.0 release * revert address sanitizer changes * fix style errors * update to the rocm recipes for 5.0.2 release * fix review comments inside the rocfft recipe * update the rocfft recipe for sqlite dependency
2022-03-25New package: ports-of-call (#29696)Richard Berger1-0/+35
2022-03-24Sherpa: add several new variants used by CMS (#29338)iarspider2-22/+85
2022-03-24vecgeom: fix install error when ~cuda (#29716)Valentin Volkl1-9/+11
2022-03-24PDC: add version 0.2 and branches (#29572)Jean Luca Bez1-1/+7
* Update package.py * Update package.py * Fixes on versions * Fix style * Remove code * Include latest version and removed code * Remove unecessary cmake dependency * Apply suggestions
2022-03-24Fix py-onnx-runtime recipe (#29646)iarspider2-11/+24
* Fix py-onnx-runtime recipe * Add missing dependencies * Update var/spack/repos/builtin/packages/py-cerberus/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Better fix for py-onnx-runtime Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-24omega-h: add v10.1.0 from fork (#29528)Cameron Smith1-0/+1
* omegah: v10.1.0 this version is from the SCOREC fork of Omega_h * prefix version with scorec Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-24add_files_to_view: flip incorrect default (#29700)Harmen Stoppels1-1/+1
2022-03-24environment views: single pass view generation (#29443)Harmen Stoppels4-1/+65
Reduces the number of stat calls to a bare minimum: - Single pass over src prefixes - Handle projection clashes in memory Symlinked directories in the src prefixes are now conditionally transformed into directories with symlinks in the dst dir. Notably `intel-mkl`, `cuda` and `qt` has top-level symlinked directories that previously resulted in empty directories in the view. We now avoid cycles and possible exponential blowup by only expanding symlinks that: - point to dirs deeper in the folder structure; - are a fixed depth of 2.
2022-03-23Update py-numpy dependency on Python to avoid build failures (#29682)Ralf Gommers1-6/+6
2022-03-23py-cffi: add compiler flags to fix build with clang (#29679)Valentin Volkl1-0/+10
* py-cffi: add compiler flags to fix build with clang For %clang@13.0.1, this avoids the ``` clang-13: warning: optimization flag '-ffat-lto-objects' is not supported [-Wignored-optimization-argument] ``` warning being turned into an error, and fixes this link error: ``` build/temp.linux-x86_64-3.10/c/_cffi_backend.o: file not recognized: file format not recognized ``` * style
2022-03-23tetgen: add v1.5.1 and v1.6.0 (#29630)Ce Qin1-1/+3
2022-03-23python: drop dependency on `file` for script check (#29513)Harmen Stoppels1-2/+6
`file` was used to detect Python scripts with shebangs, so that the interpreter could be changed from <python prefix> to <view path>. With this change, we detect shebangs using Python instead, so that `file` is no longer required.
2022-03-23kahip: add v3.12, v3.13 and v3.14 (#29648)Matthew Archer1-2/+13
Co-authored-by: cleathart <c.leathart@hotmail.co.uk>
2022-03-23variorum: update package for CCE (#29656)luker1-0/+5
CCE needs additional compiler flags.
2022-03-23libgit2: add versions 1.2.0, 1.3.0, 1.4.0, 1.4.1, 1.4.2, 1.4.3 (#29675)eugeneswalker1-0/+5
2022-03-23Use stable URLs and `?full_index=1` for all github patches (#29239)Adam J. Stewart62-184/+214
The number of commit characters in patch files fetched from GitHub can change, so we should use `full_index=1` to enforce full commit hashes (and a stable patch `sha256`). Similarly, URLs for branches like `master` don't give us stable patch files, because branches are moving targets. Use specific tags or commits for those. - [x] update all github patch URLs to use `full_index=1` - [x] don't use `master` or other branches for patches - [x] add an audit check and a test for `?full_index=1` Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-03-22ucx: add 1.12.1 (#29665)Carlos Bederián1-0/+1
2022-03-22Feature/composed boost pkg deps p1 (#28959)Abhik Sarkar19-111/+22
* This commit removes the Boost.with_default_variants to variants that packages are precisely dependant upon. This is the first batch of 20 packages with modified boost dependencies. * Style fixes * Tested bridger: works for gcc-4.9.3 and gcc-8.3.1
2022-03-22New package: Vite (#29489)François Trahay1-0/+41
2022-03-22libunwind: make v1.5.0 preferred (#29660)Massimiliano Culpo1-1/+1
Commit 26ff443 made the Gitlab pipeline failing on develop (while it was not failing in the original PR) due to errors in the fetcher. This change preserves the new versions, but will give some time for use to sync our tarball mirror for better reliability
2022-03-21libunwind: add versions 1.6.2 and 1.6-stable (#29639)Mark W. Krentel1-4/+6
2022-03-21numactl: add explicit darwin conflict (#29481)Seth R. Johnson1-0/+3
2022-03-21Add conflicts/updates for HEP tools on Summit (#29556)Seth R. Johnson3-17/+16
* Fix bad `-mfma` flag on summit * ROOT: new version and ppc conflict See https://github.com/root-project/root/issues/9297
2022-03-21geant4-data: Add latest version to make it available for geant4 (#29462)Thomas Madlener1-3/+3