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2021-03-25openssl: new version 1.1.1k (#22545)Andrew W Elble1-11/+12
also deprecates <1.1.1k since they are affected by high severity issues
2021-03-25mercurial: new version (#22539)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-25libblastrampoline: Add version 3.0.3 (#22529)Mosè Giordano1-0/+1
2021-03-24New R package pinfsc50 (#22493)Desmond Orton1-0/+25
2021-03-25py-dask-glm: Added document build (#22293)a-saitoh-fj1-1/+24
* py-dask-glm: Push again for testing with git. * py-dask-glm: Fixed the pointed out OSS dependency setting to type=build. * py-dask-glm: Set depends_on to type=build in the OSS to be built when building the document. * py-dask-glm: Fix type of depends_on (py-scikit-learn) Co-authored-by: miura <miura@fx7-pg01.cm.cluster>
2021-03-24Llvm 7 intel patch (#22516)Ethan Stam2-0/+53
* llvm@7 add patch for intel * Fix invalid version specifier
2021-03-24mesa: add gcc 10.1.0 conflict (#22514)kurtsansom1-0/+4
2021-03-24fix issue #18853 build of gdk-pixbuf (#22517)Gregory Lee1-4/+9
* fix issue #22228 build of gdk-pixbuf * Update var/spack/repos/builtin/packages/gdk-pixbuf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-24intel-parallel-studio: new version (#22510)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24openmpi: do not over specify hwloc version dep (#22498)Howard Pritchard1-1/+1
related to #22497 Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-03-24go: add v1.16.2 (#22506)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gromacs: add v2021.1 (#22507)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24hadoop: add v3.3.0, v3.2.2 (#22508)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24gdb: resolve issue with libintl_gettext (#22478)Robert Mijakovic2-0/+16
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23adding debugedit package. (#22458)Vanessasaurus1-0/+32
This package used to be a part of rpm, but now is being developed separately. It will supposedly be moved to a sourceware branch (it is maintained by redhat) but I do not know if this will happen soon. We need it in order to change locations in binaries that are built in /tmp and then moved elsewhere. I will ping @woodard who might be able to give us an estimate if we should include this development repository or wait for it to be moved elsewhere. Once this is merged, we will want to use the bootstrap approach to install and use the library from spack. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-03-23new package py-pyem (#22425)Desmond Orton1-0/+27
* new package py-pyem * Added patch note and removed homepage * Style fixes * Moved the version above deps * Style fix on line 20
2021-03-23Grace: new package (#22476)Rémi Lacroix1-0/+54
2021-03-23Allow DataTransferKit to be built with external ArborX package (#22486)Daniel Arndt2-1/+7
2021-03-23Add older versions fo py-msgpack-numpy (#22490)Robert Rosca1-0/+6
2021-03-23OpenFOAM-org: Fix compilation of version 2.4.0. (#22472)Rémi Lacroix2-0/+32
Fix "isnan" errors when compiling version 2.4.0 with recent compilers.
2021-03-23OpenFOAM: Depend on CGAL 4.X. (#22474)Rémi Lacroix1-1/+2
CGAL 5.X is currently not supported.
2021-03-23Initial version of libsakura (#22488)Martin Pokorny2-0/+69
2021-03-23VAPOR: new package (#22477)Rémi Lacroix1-0/+50
2021-03-23cryptsetup: new version (#22470)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23intel: new version, 20.0.4 (#22484)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23Channelflow: Fix the package. (#22483)Rémi Lacroix1-1/+1
A search and replace went wrong in 2264e30d99d8b9fbdec8fa69b594e53d8ced15a1. Thanks to @wadudmiah who reported this issue.
2021-03-23git: new version (#22479)Robert Mijakovic1-0/+15
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23flexiblas: add 3.0.4 (#22485)Michael Kuhn1-0/+1
2021-03-23cuda: add v11.2.2 (#22471)Robert Mijakovic1-0/+4
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23OpenMPI: require ssh run dependency (#22115)Harmen Stoppels5-26/+32
* Bump gdbm * Add libedit 3.1 * Bump OpenSSH to 8.5p1 * Bump lz4 * Add openssh as a runtime dep of openmpi
2021-03-23gmake: add v4.3 (#22480)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23cmake: new version (#22469)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23orthofinder: retrieve sources, overhaul recipes (#22423)Desmond Orton1-8/+26
2021-03-23fujitsu-ssl2: fix to library list and env variables (#22462)takanori-ihara1-5/+10
2021-03-22Oneapi packages: update URLs, environment management, and dependencies (#22202)Robert Cohn10-217/+156
* Replace URL computation in base IntelOneApiPackage class with defining URLs in component packages (this is expected to be simpler for now) * Add component_dir property that all oneAPI component packages must define. This property names a directory that should exist after installation completes (useful for making sure the install was successful) and also defines the search location for the component's environment update script. * Add needed dependencies for components (e.g. intel-oneapi-dnn requires intel-oneapi-tbb). The compilers provided by intel-oneapi-compilers need some components under certain circumstances (e.g. when enabling SYCL support) but these were omitted since the libraries should only be linked when a dependent package requests that feature * Remove individual setup_run_environment implementations and use IntelOneApiPackage superclass method which sources vars.sh (located in a subdirectory of component_dir) * Add documentation for IntelOneApiPackge build system Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
2021-03-22clingo-bootstrap: account for cray platform (#22460)Massimiliano Culpo1-3/+7
2021-03-22Add Kokkos smoke test support (#22071)Jan Ciesko1-3/+52
Co-authored-by: Jan Ciesko (-EXP) <jciesko@sandia.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-03-22Invoke ctest -j1 from spack install --test, and build_with_parsec from spack ↵Aurelien Bouteiller1-2/+35
test run (#22070) Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2021-03-22IPython: add v7.21.0 and updated dependencies accordingly (#22448)Harmen Stoppels4-2/+15
2021-03-22rpm: add new package. (#22382)Vanessasaurus2-0/+153
For rpm to build with lua, we additionally need to add a lua.pc file that the configure script can find. Patch from : https://git.pantherx.org/mirror/guix/-/blob/dcaf70897a0bad38a4638a2905aaa3c46b1f1402/gnu/packages/patches/lua-pkgconfig.patch Co-authored-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-03-22Spack recipes for AOCL 3.0 (#22376)AMD Toolchain Support7-48/+75
Added Spack recipes for AOCL 3.0 blis, ambles, amdlibflame, amdlibm, amdscalapack, aocl-sparce.
2021-03-22openssh: support spack external find (#22445)Seth R. Johnson1-0/+11
2021-03-22GENIE: new package package (#22438)David Hadley2-0/+194
Add GENIE MC (https://www.genie-mc.org) package.
2021-03-22py-tensorflow: remove bazel restriction to /tmp (#22250)André Brandenburger1-1/+1
2021-03-22lammps: add most recent stable and patch release (#22435)TZ1-0/+2
2021-03-22lammps: patch for CUDA-11.x with lammps 21 Jul 2020 (#22434)TZ1-0/+3
apply upstream patch to make lammps 21 Jul 2020 work with CUDA-11.x (support for compute_30 removed)
2021-03-22freetype: new version (#22454)Robert Mijakovic1-0/+1
2021-03-22extrae: new version (#22453)Robert Mijakovic1-0/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-22blis: new version (#22449)Robert Mijakovic1-0/+1
2021-03-22doxygen: new version (#22452)Robert Mijakovic1-0/+2
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