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2018-01-14r-rappdirs: Create new package. (#6891)lingnanyuan1-0/+39
* r-rappdirs: Create new package. * r-rappdirs: Add version constraints.
2018-01-14Qt fixes for RHEL6/7 (#6895)Milton Woods4-38/+69
* qt: move licence acceptance from qt3krell.patch to qt3accept.patch * qt: ensure that ptrdiff_t is defined for qt@3.3.8b * qt: disable webglplugin for qt@5.10~opengl * qt: depend on libxext (for qt@3 and @4) * qt: avoid X dependencies on darwin platforms * Revert "qt: avoid X dependencies on darwin platforms" This reverts commit 05ce08de94be1e02d7e2f2dae0c1ae59baa3f65a. * qt: limit range of versions depending on libxext
2018-01-14Fix installation of bash-completion (#6911)healther1-0/+4
* Fix installation of bash-completion * use run_before decorator instead of overriding install method
2018-01-14Update py-backports-functools-lru-cache to 1.4 (#6915)healther1-4/+5
* Update py-backports-functools-lru-cache to 1.4 * fix old url
2018-01-14make vim python3 compatible (#6925)healther1-2/+7
2018-01-14Updated catch to newer version (up to 2.1.0) (#6933)David Pérez-Suárez1-20/+28
Also updated all the sums from previous versions
2018-01-14Add version 1.81 of cppcheck (#6912)healther1-0/+1
2018-01-13Catalyst package (#6834)Simone Bnà1-0/+167
* catalyst: added catalyst package * catalyst: missing libx11 and libxt dependencies * catalyst: added std cmake args * catalyst: override paraview git describe cmake variable * catalyst: fixed flake8 errors
2018-01-13Do not construct path to perl command manually (#6927)Michael Kuhn5-10/+8
Instead, use spec['perl'].command.path.
2018-01-13Add PyNN 0.9.1 (#6926)healther1-1/+4
2018-01-13Update checksum for version 0.5.3 of yaml-cpp (#6924)healther1-1/+1
2018-01-13Add py-pyflakes versions up to 1.6.0 (#6923)healther1-0/+3
2018-01-13Add py-pycodestyle versions up to 2.3.1 (#6922)healther1-0/+4
2018-01-13Update py-neo to 0.5.2 (#6921)healther1-0/+1
2018-01-13Add py-mccabe versions up to 0.6.1 (#6920)healther1-0/+3
2018-01-13add version 1.26 to py-git-review and fix run_env (#6919)healther1-1/+2
* Update py-git-review to version 1.26.0 * Fix py-git-review package TypeError: object of type 'Version' has no len()
2018-01-13Update py-flake8 to 3.5.0 (#6918)healther1-0/+7
2018-01-13py-doxypy conflicts python3 (#6916)healther1-0/+2
* py-doxypy conflicts python3 * change conflicts to depends_on
2018-01-13Update py-autopep8 to 1.3.3 (#6914)healther1-1/+3
* Update py-autopep8 to 1.3.3 * Update package.py
2018-01-13glib: Fix python handling (#6910)Michael Kuhn1-5/+26
Newer versions of glib require python. Fix up the python sbangs the same way we already fix up the perl ones. Fixes #6899
2018-01-13add patch for gccxml with gcc@5: (#6913)healther2-0/+59
2018-01-13Update py-elephant to 0.4.1 (#6917)healther1-0/+1
2018-01-12Handle test dependencies that are python extensions (#6904)scheibelp1-1/+1
See #6794 This fixes cases where test-only dependencies were omitted from consideration when modifying the environment at build time. This includes an update to the python package definition to add testing-related python extensions to its specialized environment setup.
2018-01-12coinhsl: add version 2014.01.10 (#6909)Geoffrey Oxberry1-0/+15
* coinhsl: add version 2014.01.10 (stable) * coinhsl: make 2014.01.10 preferred version Make Harwell Subroutines Library for IPOPT version 2014.01.10 the preferred version because it is the latest stable version released. * coinhsl: add option to link w/ BLAS libraries
2018-01-12A new package: ethminer. (#6908)健美猫1-0/+54
2018-01-11libbson, libmongoc: Update to 1.9.1 (#6900)Michael Kuhn2-0/+6
2018-01-11Updated misc devel tools. (#6897)stefanosoffia7-1/+8
2018-01-11fix ips 2018 vtune directory name (#6893)Gregory Lee1-1/+4
2018-01-10r-biocstyle: Create new package. (#6503)lingnanyuan1-0/+41
* r-biocstyle: Create new package. * r-biocstyle: add version constraints.
2018-01-10r-bookdown: Create new package. (#6504)lingnanyuan1-0/+41
* r-bookdown: Create new package. * r-bookdown: add version constraints.
2018-01-10r-rprojroot: Create new package. (#6505)lingnanyuan1-0/+40
* r-rprojroot: Create new package. * r-rprojroot: add version constraints. * r-rprojroot: Add list_url.
2018-01-10r-rmarkdown: Update version to 1.7 (#6506)lingnanyuan1-5/+9
* r-rmarkdown: Update version to 1.7 * r-rmarkdown: add version constraints.
2018-01-10discovardenovo: adding new package (#6888)snehring1-0/+45
2018-01-10package libharu: Add build deps (#6883)jkelling1-0/+3
... libtool,autoconf,automake
2018-01-10Updated i3 dependencies. (#6885)stefanosoffia7-0/+7
2018-01-10Geant4: fix qt dependency (#6828)Adam J. Stewart1-2/+2
2018-01-10Older versions of libiconv don't work with newer versions of GCC (#6829)Adam J. Stewart1-0/+2
2018-01-10opa-psm2: new package (#6874)Levi Baber1-0/+54
* opa-psm2: new package * opa-psm2: installs now. think the module file needs work * opa-psm2: module file seems good now * opa-psm2: remove fixme * opa-psm2: flake8 fixes * opa-psm2: removing unnecessary make in install phase
2018-01-10bcftools is a AutotoolsPackage. (#6881)健美猫1-5/+1
2018-01-10emacs: on darwin, do not build Cocoa app (#6882)Geoffrey Oxberry1-0/+7
Building emacs on darwin throws an error when trying to build an Emacs app in the nextstep/Emacs.app path of the build tree. For now, disable building this app. It's possible to enable building the app also; Homebrew offers options to this effect, and also adds Mac-specific options for starting the emacs daemon. However, for the sake of simplicity and getting a workable up-to-date emacs installation on my machine as quickly as possible, this commit focuses on a minimal viable modification.
2018-01-10Add a new package: unblur. (#6867)健美猫1-0/+72
* Add a new package: unblur. * Add a new package: unblur. * Add a new package: unblur. * Add a new package: unblur. Conflicts: var/spack/repos/builtin/packages/unblur/package.py * Add a new package: unblur.
2018-01-10Explicitly cast Version to str in openfoam-org (#6880)Adam J. Stewart1-2/+2
2018-01-10Fix tests for git package (#6869)Adam J. Stewart1-0/+3
2018-01-09casper: new package (#6873)Yifan Zhu2-2/+54
* casper: create package * jellyfish: added version 2.2.7 * casper: new package * casper: depends on jellyfish 2.2.3 or higher * casper: moved depends_on above install * casper: updated package.py * fixing download url for 1.11.1 * casper: set up environment * casper: add conflicts gcc@7.1.0, cannot install with 7.1.0 * capser: flake8 error corrcted * casper: create package * jellyfish: added version 2.2.7 * casper: new package * casper: depends on jellyfish 2.2.3 or higher * casper: moved depends_on above install * casper: updated package.py * fixing download url for 1.11.1 * casper: set up environment * casper: add conflicts gcc@7.1.0, cannot install with 7.1.0 * capser: flake8 error corrcted
2018-01-09prodigal: Create new package (#6870)Eric1-0/+41
2018-01-09A new package: jbigkit. (#6847)健美猫1-0/+54
* A new package: jbigkit. * A new package: jbigkit. * Add a new package: jbigkit.
2018-01-09changed url for astyle (#6863)BenBrands1-3/+3
* changed url for astyle * use SourceForge
2018-01-09[WIP] Fix git gettext/libintl handling (builds on ubuntu) (#6859)George Hartzell1-2/+18
* Fix git on ubuntu, first cut Spack needs to pass information about where the linker can find `libintl`. We're currently using `LDFLAGS` to do so. The `LDFLAGS` info is pasted into the command line upstream of the a file (`libgit.a`) that includes unresolved symbols that need that library. This fails on Ubuntu, although it seems to work on CentOS (see #6841). This change allows git to build on a Ubuntu 16.04.3 droplet. TODO: test on other platforms... * Add a bit of useful commentary
2018-01-09Fix missing dependency in ghostscript (#6866)Federico Ficarelli1-0/+1
2018-01-09Remove std_cmake_args from VTK definition (#6856)Adam J. Stewart1-5/+6
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