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Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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* cosmomc: Enable Python bindings
* cosmomc: Make python dependency optional
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* hdf5: Correct spelling
* hdf5: avoid trailing spaces
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* highfive: New package; this is a C++ wrapper for the HDF5 library
The C++ wrapper that is shipped with the HDF5 library has several shortcomings. The highfive library seems to avoid these.
* highfive: Make MPI variant default to true
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* Add latest version of PGI compilers
* Prepend, don't overwrite
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* version updates, remote switch
* trim versions to original and most recent
* proper url discovered and tested
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* enable cuda support for suite-sparse
* do not use spec.satisfies
* cuda restructure, give clearer comment of why
* str format compatibility
* flake8 checks
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* Fix newline character in GCC package
* Remove the newline completely
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* adding 0.5.1 and variant for uint8 bit stream word type
* Revisions as per davydden
* fixing style (flake8) issues
* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant
* added build method; changed zfp_incdir to incdir
* * Adding uber fastmath package to support 'spack install fastmath'
* Adding dims variant boxlib to control compile-time spatial dimension count
* Explicitly disabling many parts of moab to get lib to build. Don't need tools yet.
* Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined.
* adding mesquite package
* * Added Chombo (still working on Fortran name mangling)
* Made mesquite depend on mpi
* Fixed use of boxlib's dims numerical variant
* adding PUMI
* flake8 compliance
* adding phasta
* fixing flake8 issues
* undue $SYS_TYPE protection change
* fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR
* revisions as per adamjstewart
* re-enabling trilinos and phasta dependencies
* all changes requested modulu values= and assert statement
* fixing cmake_args usage in pumi; fixing lib installs for chombo
* first pass at numerical variant
* fixing dims variant as per @adamjstewart
* fixing func/var name collision
* fixing means of disabling -Werror
* fix name collision for cmake_args var/func
* fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim
* remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle
* fix flake8 import os issue
* remove extraneous comment
* adding url for fastmath scidac site
* final fixes as per @adamjstewart
* adding 1 dims option for boxlib
* switching make(all) to gmake(all)
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Make openmpi handle bad ibv_devices return statuses without bailing out completely.
See #4162 for background.
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Otherwise, the install can fail if the system-provided `tic` binary is too old.
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Also use a Spack-provided GoogleTest.
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Added DFLAGS to the `make.inc` file being written.
These macros are also added to the language specific variables
like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')`
with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic
build interface to `intel-mpi`.
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* Add GCC 7
* Allow users to build subset of GCC compilers with multi-value variant.
* Add comment explaining what 'all' actually means
* More specific golang support
* Only require Zip when building Java
* Comment out provide directives that don't currently work
* Add Ada support
* Use conflicts directive
* Fix joining of languages
* Need special flag to build jit
* Explicitly declare GNAT download extension
* Import tty, update lib64 to lib
* BRIG and Go are not supported on macOS
* Simplify formatting and imports
* JIT patch required for newer versions as well
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* qt: add 5.8.0 which builds on Sierra with clang 8.1.0
* enable parallel build, add freetype dependency
* minor
* minor
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Remove python dependency for libxcb and xcbproto
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* adding paramiko and missing dependencies, setup to work with #2548
* adding other deps for paramiko
* fix flake8 errors
* removed spurious add
* address suggestion for proper dependencies
* fix cryptography deps
* remove FIXME comments and commented depends lines
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* Add list_url to mpfr
* Switch to download directly from GNU
* http -> https
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* Updating bamtools to include a dependency for zlib.
In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package.
* Modified cmake rpath include.
Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this...
* Fixing syntax error in package.py
Fixed a non-terminated parenthesis on line 46.
* Updated bamtools to be a CMakePackage
Removed extraneous code, and altered the package to extend cmake_args
including the non-standard library location.
* UpRemoving cmake dependency and removing blank line from end of file
* Updates to cmake_args.
Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
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* Fix -include issue with intel and pgi in zlib
MERGE CANDIDATE
* Patch zlib to compiler with the cray compiler suite.
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What the user wants, the user gets....
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python+tk will not build because it depends (indirectly) on python~tk
via libxcb. There are efforts to allow multiple instances of a package
to concretize together but they are ongoing so in the meantime this
comments out the dependencies and adds TODOs
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* Fix ordering of versions (proper!)
* Add url/digest for jdk@8u73
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* SV variants are evaluated correctly in `when=` statements fixes #4113
The problem here was tricky:
```python
spec.satisfies(other)
```
changes already the MV variants in others into SV variants (where
necessary) if spec is concrete. If it is not concrete it does
nothing because we may be acting at a pure syntactical level.
When evaluating a `when=` keyword spec is for sure not concrete
as it is in the middle of the concretization process. In this case we
have to trigger manually the substitution in other to not end up
comparing a MV variant "foo=bar" to a SV variant "foo=bar" and having
False in return. Which is wrong.
* sv variants: improved error message for typos in "when=" statements
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* Update py-beautifulsoup4
* Change beautifulsoup4 url to pypi.io url.
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* building wget depends on perl > 5.12.0
* Remove extra parenthesis
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* spack: no stacktrace if not in debug mode + fix emacs variant
* emacs: removed dead code
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* Add the py-dryscrape package
* Adjust dependencies and change development to develop
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* Add the py-webkit-server package
* Change development to develop
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