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2021-05-11med: add HDF5 support and other variants (#23555)Olivier Cessenat1-22/+37
Enhancing package med enlarged HDF5 compatibility, more options, new version
2021-05-11cp2k: update libvori and libxc dependencies (#23553)Tiziano Müller2-3/+8
2021-05-10root: add first `spack external find` supportValentin Volkl1-0/+21
only parses the version, variant parsing will follow.
2021-05-10[py-pyjwt] added version 2.1.0 (#23547)Jen Herting1-0/+3
2021-05-10CrayPE fixes for MAGMA (#23497)lukebroskop1-0/+6
Force CCE to compile fortran modules with lower case names, allow for CCE to be the host compiler with nvcc
2021-05-10Add ReFrame 3.6.0 (#23551)Vasileios Karakasis1-0/+2
2021-05-10New package: libmicrodns (#22145)darmac1-0/+17
2021-05-10zfp: Add python as explicit dependency (#23478)Tom Payerle1-0/+1
A proposed fix for #23436
2021-05-10[py-websocket-client] added version 0.48.0 (#23549)Jen Herting1-0/+1
2021-05-10tau: revert depends_on generic elf provider (#23548)eugeneswalker1-1/+1
2021-05-10Bump fuse-overlayfs (#23541)Harmen Stoppels1-0/+1
2021-05-10craype fix for omega-h (#23504)lukebroskop1-0/+4
add -Wno-final-dtor-non-final-class flag
2021-05-10WarpX: 21.05 (#23543)Axel Huebl1-0/+3
Add the latest release of WarpX.
2021-05-10CrayPE fix for unifyfs (#23498)lukebroskop1-0/+5
When building with CCE, do not use the -Werror flag
2021-05-10CrayPE fix for otf2 (#23499)lukebroskop2-0/+23
when using Cray's cs-prgenv, allow the build system to detect the systems as an XC
2021-05-10CrayPE fix for json-c (#23515)lukebroskop1-0/+6
remove -Werror flag when compiling with cce
2021-05-10depend on elf provider in place of specifically libelf (#23524)eugeneswalker1-1/+1
2021-05-10py-numpy: add v1.20.3 (#23545)Adam J. Stewart1-0/+1
2021-05-10metall: fix incorrect use of setup_build_environment (#23532)eugeneswalker1-2/+2
2021-05-10Add new package: ima-evm-utils (#22161)darmac1-0/+23
2021-05-10Use define_from_variant for HiOp package (#23536)Cameron Rutherford1-47/+13
2021-05-10binutils: Improve flag_handler (#22642)Michael Kuhn1-3/+6
`flag_handler` currently passes all flags via injection. This makes it impossible to override the default flags provided by autotools (for instance, `binutils cflags='-O2'` will still build with `-O2 -g`). Instead, use injection for our workaround flags and pass other flags to the build system.
2021-05-08py-matplotlib: add v3.4.2 (#23531)Adam J. Stewart1-0/+1
2021-05-08py-vermin: add latest version 1.2.0 (#23528)Morten Kristensen1-1/+2
2021-05-07craype fix for pdt (#23505)lukebroskop2-0/+18
* craype fix for pdt adapt the pdt package for cce * fix style issues
2021-05-07mercury: add version 2.0.1 (#23521)Jerome Soumagne1-0/+1
2021-05-07CrayPE fix for pfunit (#23512)lukebroskop1-1/+1
allow cce to be the compiler
2021-05-07Bugfix/matplotlib clang lto (#23519)dsjense1-0/+2
* Disable link-time optimization for matplotlib when using Clang. * Remove duplicated line. * Disable LTO only for versions >= 3.3.0.
2021-05-07Add conflict for the CCE compiler (#23502)lukebroskop1-0/+1
Add conflict for the CCE compiler
2021-05-07geos: Fix config issues with python bindings using python3 (#23479) (#23480)Tom Payerle2-0/+74
* geos: Fix config issues with python bindings using python3 (#23479) This should fix some config issues when building geos with python bindings and using python3 --- the geos configuration scripts had a few python2-isms. I only tested (lightly; geos built and I can import geos in python3) on 3.8.1, but I did check that the patch can at least be applied in 3.5. I belatedly discovered that geos dropped all the SWIG bindings in @3.9, so I also added some conflicts on the +python and +ruby options to note that they are not supported in 3.9. * geos: adding omitted patch file
2021-05-07fix check when retrieving matching spec from environment when there is a ↵Peter Josef Scheibel1-0/+1
match with a root spec as well as with a dependency of a root spec
2021-05-07Update py-hieroglyph (#23279)Claire Guilbaud1-4/+6
2021-05-07fdb: new package with deps (#23175)Sergey Kosukhin6-0/+331
2021-05-07GDAL: add v3.3.0 (#23426)Adam J. Stewart1-6/+37
2021-05-07libmonitor: add v2021.04.27 (#23460)Mark W. Krentel1-0/+1
2021-05-07at-spi2-core: add v2.40.1 (#23467)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07at-spi2-atk: add v2.38.0 (#23468)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-07gdbm: patch when using arm@21.0: (#23492)Andrei Poenaru1-0/+1
2021-05-07CGNS:add v4.2.0, v4.1.2 and remove conflicting variant (#23481)Greg Sjaardema1-3/+2
Added the checksum for 4.1.2 and 4.2.0 The `parallel` variant did the exact same behavior as the `mpi` variant, but they had different default values than each other. Both variants set the value of `-DCGNS_ENABLE_PARALLEL`, so it was unclear which variant was "winning" and could definitely result in a non-intuitive build. Did a grep of the spack packages and none of them where using the `parallel` variant to control the cgns options. Retained the `mpi` variant as that one is being used by multiple packages. One issue that remains to be solved is that the default integer size has changed from 32-bit to 64-bit for the 4.2.0 release. This is controlled by the `int64` variant which currently defaults to `OFF`. There should maybe be some thought about changing the default to match the default of the current release, or maybe having a version-specific default... For now, left the behavior as it has been for previous versions.
2021-05-07OpenMPI: dont apply atomic patch for 4.1.1 and later (#23483)Howard Pritchard1-1/+1
The patch available in spack does not patch cleanly for the 4.1.1 and presumably later releases. See Open MPI commit b8a8096a3f153380f95af8f285f48e926eb18bf1 Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-05-07adms: new package (#23466)Olivier Cessenat1-0/+28
2021-05-07silo: add "hzip" and "fzip" variants (#23447)Steven Smith1-0/+6
SILO has optional support for compression libraries that require C++ (hzip and fpzip). This patch exposes those options as variants to enable configuration of SILO without the C++ libraries for C applications. hzip and fpzip are enabled by default to preserve current behavior.
2021-05-07gromacs: add v2021.2 (#23487)Gilles Gouaillardet1-0/+1
2021-05-06py-keras: new version (#22711)Robert Mijakovic1-4/+9
* py-keras: new version * Adds missing dependencies. * Removes the newline which is against formatting rules. * py-keras: limits some dependencies to older versions * py-keras: restricts dependencies * pykeras: fixes dependency ranges :) Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de> Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-05-06py-brian2: Fix missing open range for python dependency (#23469)Sebastian Schmitt1-1/+1
2021-05-06amp: cleanup of the recipe (#23079)Massimiliano Culpo1-99/+67
2021-05-06mlperf-deepcam: fixed issue with cuda variant and deps (#23087)Massimiliano Culpo3-7/+1
2021-05-06boost: Switch download URL (#23422)Dr. Christian Tacke1-1/+1
boost has moved its downloads from a bintray URL to a jfrog URL. See: https://www.boost.org/users/news/boost_has_moved_downloads_to_jfr.html
2021-05-06arrow: zstd+pic variant does not exist anymore (#23463)Valentin Volkl1-1/+1
2021-05-06openblas: add version 0.3.15 (#23461)Kai Torben Ohlhus1-0/+1
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