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spack:
  view: false
  packages:
    all:
      providers:
        blas:
          - openblas
        mkl:
          - intel-oneapi-mkl
        mpi:
          - openmpi
          - mpich
      variants: +mpi
    tbb:
      require: "intel-tbb"
    binutils:
      variants: +ld +gold +headers +libiberty ~nls
      version:
        - 2.36.1
    doxygen:
      version:
        - 1.8.20
    elfutils:
      variants: +bzip2 ~nls +xz
    hdf5:
      variants: +fortran +hl +shared
    libfabric:
      variants: fabrics=efa,tcp,udp,sockets,verbs,shm,mrail,rxd,rxm
    libunwind:
      variants: +pic +xz
    mesa:
      variants: ~llvm
    mesa18:
      variants: ~llvm
    mpich:
      variants: ~wrapperrpath netmod=ofi device=ch4
    ncurses:
      variants: +termlib
    openblas:
      variants: threads=openmp
    openmpi:
      variants: fabrics=ofi +legacylaunchers
    openturns:
      version: [1.18]
    relion:
      variants: ~mklfft
#    texlive:
#      version: [20210325]
    trilinos:
      variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
    xz:
      variants: +pic

  definitions:

  - compiler_specs:
    - gcc@11.2
    # Licensing OK?
    # - intel-oneapi-compilers@2022.1
    # - nvhpc

  - cuda_specs:
# Disabled for consistency with aarch64
    #- relion +cuda cuda_arch=70
    - raja +cuda cuda_arch=70
    - mfem +cuda cuda_arch=70

  - app_specs:
    - bwa
# Disabled for consistency with aarch64
    #- bowtie2
# Disabled for consistency with aarch64
    #- cistem
    - cromwell
    - fastqc
    - flux-sched
    - flux-core
    - flux-pmix
    - gatk
    - gromacs
    - lammps
    - wrf build_type=dm+sm
    - mfem
    - mpas-model ^parallelio+pnetcdf
    - nextflow
    - octave
    - openfoam
    - osu-micro-benchmarks
    - parallel
    - paraview
    - picard
    - quantum-espresso
# Build broken for gcc@7.3.1 x86_64_v4 (error: '_mm512_loadu_epi32' was not declared in this scope)
    #- raja
# Disabled for consistency with aarch64
    #- rsem
    # Errors on texlive
    #- rstudio
    - salmon
    - samtools
    - seqtk
    - snakemake
    - star
    # Requires gcc@9:
    #- ufs-weather-model
# Disabled for consistency with aarch64
    #- visit

  - lib_specs:
    - openmpi fabrics=ofi
    - openmpi fabrics=ofi +legacylaunchers
    - openmpi fabrics=auto
    - mpich
    - libfabric

  - compiler:
    - '%gcc@7.3.1'

  - target:
    - 'target=x86_64_v3'


  specs:

  - matrix:
    - - $cuda_specs
    - - $compiler
    - - $target

  - matrix:
    - - $app_specs
    - - $compiler
    - - $target

  - matrix:
    - - $lib_specs
    - - $compiler
    - - $target

  - matrix:
    - - $compiler_specs
    - - $compiler
    - - $target

  ci:
    pipeline-gen:
    - build-job:
        image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2023-03-09", "entrypoint": [""] }

  cdash:
    build-group: AWS Packages