1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
|
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Adios(AutotoolsPackage):
"""The Adaptable IO System (ADIOS) provides a simple,
flexible way for scientists to describe the
data in their code that may need to be written,
read, or processed outside of the running simulation.
"""
homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
url = "https://github.com/ornladios/ADIOS/archive/v1.12.0.tar.gz"
git = "https://github.com/ornladios/ADIOS.git"
maintainers = ['ax3l']
version('develop', branch='master')
version('1.13.1', sha256='b1c6949918f5e69f701cabfe5987c0b286793f1057d4690f04747852544e157b')
version('1.13.0', sha256='7b5ee8ff7a5f7215f157c484b20adb277ec0250f87510513edcc25d2c4739f50')
version('1.12.0', sha256='22bc22c157322abec2d1a0817a259efd9057f88c2113e67d918a9a5ebcb3d88d')
version('1.11.1', sha256='9f5c10b9471a721ba57d1cf6e5a55a7ad139a6c12da87b4dc128539e9eef370e')
version('1.11.0', sha256='e89d14ccbe7181777225e0ba6c272c0941539b8ccd440e72ed5a9457441dae83')
version('1.10.0', sha256='6713069259ee7bfd4d03f47640bf841874e9114bab24e7b0c58e310c42a0ec48')
version('1.9.0', sha256='23b2bb70540d51ab0855af0b205ca484fd1bd963c39580c29e3133f9e6fffd46')
variant('shared', default=True,
description='Builds a shared version of the library')
variant('fortran', default=False,
description='Enable Fortran bindings support')
variant('mpi', default=True,
description='Enable MPI support')
variant('infiniband', default=False,
description='Enable infiniband support')
# transforms
variant('zlib', default=True,
description='Enable zlib transform support')
variant('bzip2', default=False,
description='Enable bzip2 transform support')
variant('szip', default=False,
description='Enable szip transform support')
variant('zfp', default=True,
description='Enable ZFP transform support')
variant('sz', default=True,
description='Enable SZ transform support')
variant('lz4', default=True,
description='Enable LZ4 transform support')
variant('blosc', default=True,
description='Enable Blosc transform support')
# transports and serial file converters
variant('hdf5', default=False,
description='Enable parallel HDF5 transport and serial bp2h5 ' +
'converter')
variant('netcdf', default=False, description='Enable netcdf support')
variant(
'staging', values=any_combination_of('flexpath', 'dataspaces'),
description='Enable dataspaces and/or flexpath staging transports'
)
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('m4', type='build')
depends_on('libtool', type='build')
depends_on('python', type='build')
depends_on('mpi', when='+mpi')
# optional transformations
depends_on('zlib', when='+zlib')
depends_on('bzip2', when='+bzip2')
depends_on('szip', when='+szip')
depends_on('sz@:1.4.10', when='@:1.12.0 +sz')
depends_on('sz@1.4.11.0:1.4.11.99', when='@1.13.0 +sz')
depends_on('sz@1.4.12.3:1.4.12.99', when='@1.13.1: +sz')
depends_on('zfp@0.5.1:0.5.99', when='+zfp')
depends_on('lz4', when='+lz4')
depends_on('c-blosc@1.12.0:', when='+blosc')
# optional transports & file converters
depends_on('hdf5@1.8:+hl+mpi', when='+hdf5')
depends_on('netcdf-c', when='+netcdf')
depends_on('libevpath', when='staging=flexpath')
depends_on('dataspaces+mpi', when='staging=dataspaces')
for p in ['+hdf5', '+netcdf', 'staging=flexpath', 'staging=dataspaces']:
conflicts(p, when='~mpi')
build_directory = 'spack-build'
# ADIOS uses the absolute Python path, which is too long and results in
# "bad interpreter" errors - but not applicable for 1.9.0
patch('python.patch', when='@1.10.0:')
# Fix ADIOS <=1.10.0 compile error on HDF5 1.10+
# https://github.com/ornladios/ADIOS/commit/3b21a8a41509
# https://github.com/spack/spack/issues/1683
patch('adios_1100.patch', when='@:1.10.0^hdf5@1.10:')
# ADIOS 1.13.1 is written for ZFP 0.5.0 interfaces
# https://github.com/ornladios/ADIOS/pull/204
patch('zfp051.patch', when='@1.11.0:1.13.1')
# Fix a bug in configure.ac that causes automake issues on RHEL 7.7
patch('https://github.com/ornladios/ADIOS/pull/207.patch', when='@1.12.0:',
sha256='01113e9efb929d71c28bf33cc8b7f215d85195ec700e99cb41164e2f8f830640')
def validate(self, spec):
"""Checks if incompatible variants have been activated at the same time
Args:
spec: spec of the package
Raises:
RuntimeError: in case of inconsistencies
"""
if '+fortran' in spec and not self.compiler.fc:
msg = 'cannot build a fortran variant without a fortran compiler'
raise RuntimeError(msg)
def with_or_without_hdf5(self, activated):
if activated:
return '--with-phdf5={0}'.format(
self.spec['hdf5'].prefix
)
return '--without-phdf5'
def setup_build_environment(self, env):
# https://github.com/ornladios/ADIOS/issues/206
if self.spec.satisfies('%gcc@10: +fortran'):
env.set('FCFLAGS', '-fallow-argument-mismatch')
def configure_args(self):
spec = self.spec
self.validate(spec)
extra_args = [
# required, otherwise building its python bindings will fail
'CFLAGS={0}'.format(self.compiler.cc_pic_flag)
]
extra_args += self.enable_or_disable('shared')
extra_args += self.enable_or_disable('fortran')
if '+mpi' in spec:
env['MPICC'] = spec['mpi'].mpicc
env['MPICXX'] = spec['mpi'].mpicxx
extra_args += self.with_or_without('mpi', activation_value='prefix')
extra_args += self.with_or_without('infiniband')
# Transforms
variants = ['zlib', 'bzip2', 'szip']
if spec.satisfies('@1.11.0:'):
variants += ['zfp']
if spec.satisfies('@1.12.0:'):
variants += ['sz', 'lz4']
if spec.satisfies('@1.13.0:'):
extra_args += self.with_or_without(
'blosc',
activation_value=lambda x: spec['c-blosc'].prefix
)
# External I/O libraries
variants += ['hdf5', 'netcdf']
for x in variants:
extra_args += self.with_or_without(x, activation_value='prefix')
# Staging transports
def with_staging(name):
if name == 'flexpath':
return spec['libevpath'].prefix
return spec[name].prefix
extra_args += self.with_or_without(
'staging',
activation_value=with_staging
)
return extra_args
|