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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Alquimia(CMakePackage):
"""Alquimia is an interface that exposes the capabilities
of mature geochemistry codes such as CrunchFlow and PFLOTRAN"""
homepage = "https://github.com/LBL-EESA/alquimia-dev"
git = "https://github.com/LBL-EESA/alquimia-dev.git"
maintainers = ['smolins', 'balay']
version('develop')
version('1.0.9', commit='2ee3bcfacc63f685864bcac2b6868b48ad235225') # tag v.1.0.9
version('xsdk-0.6.0', commit='9a0aedd3a927d4d5e837f8fd18b74ad5a78c3821')
version('xsdk-0.5.0', commit='8397c3b00a09534c5473ff3ab21f0e32bb159380')
version('xsdk-0.4.0', commit='2edad6733106142d014bb6e6a73c2b21d5e3cf2d')
version('xsdk-0.3.0', tag='xsdk-0.3.0')
variant('shared', default=True,
description='Enables the build of shared libraries')
depends_on('mpi')
depends_on('hdf5')
depends_on('pflotran@3.0.2', when='@1.0.9')
depends_on('pflotran@xsdk-0.6.0', when='@xsdk-0.6.0')
depends_on('pflotran@xsdk-0.5.0', when='@xsdk-0.5.0')
depends_on('pflotran@xsdk-0.4.0', when='@xsdk-0.4.0')
depends_on('pflotran@xsdk-0.3.0', when='@xsdk-0.3.0')
depends_on('pflotran@develop', when='@develop')
depends_on('petsc@3.10.0:3.10', when='@xsdk-0.4.0')
depends_on('petsc@3.8.0:3.8', when='@xsdk-0.3.0')
depends_on('petsc@3.10:', when='@develop')
def cmake_args(self):
spec = self.spec
options = ['-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
'-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
'-DUSE_XSDK_DEFAULTS=YES',
self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
'-DTPL_ENABLE_MPI:BOOL=ON',
'-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix,
'-DTPL_ENABLE_HDF5:BOOL=ON',
'-DXSDK_WITH_PFLOTRAN:BOOL=ON',
# This is not good.
# It assumes that the .a file exists and is not a .so
'-DTPL_PFLOTRAN_LIBRARIES=%s' % (
spec['pflotran'].prefix.lib + "/libpflotranchem.a"),
'-DTPL_PFLOTRAN_INCLUDE_DIRS=%s' % (
spec['pflotran'].prefix.include),
'-DTPL_ENABLE_PETSC:BOOL=ON',
'-DPETSC_EXECUTABLE_RUNS=ON',
'-DCMAKE_INSTALL_NAME_DIR:PATH=%s/lib' % self.prefix]
return options
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