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--- a/ambertools_tmpdir/AmberTools/src/configure2 2020-09-10 07:37:44.380726161 -0700
+++ b/ambertools_tmpdir/AmberTools/src/configure2 2020-09-10 07:38:22.052936370 -0700
@@ -3190,7 +3190,7 @@
cd fftw-3.3 && \
./configure --disable-doc --prefix=$amberprefix --libdir=$amberprefix/lib \
--enable-static $enable_mpi $mpicc $enable_debug $enable_sse\
- CC="$cc" CFLAGS="$cflags $coptflags" \
+ CC="$cc" CFLAGS="$cflags $cnooptflags" \
F77="$fc" FFLAGS="$fflags $foptflags" \
FLIBS="$flibs_arch" \
> ../fftw3_config.log 2>&1
@@ -3287,6 +3287,8 @@
# b2 install will use intel-linux.compile.c++ (boost_1_64_0).
./bootstrap.sh --prefix=$amberprefix --with-toolset=intel-linux > ../boost_config.log
ncerror=$?
+ elif [ $x86_64 = 'no' ] && [ "$compiler" = 'pgi' ]; then
+ ./bootstrap.sh --prefix=$amberprefix --with-toolset=pgi > ../boost_config.log
else
./bootstrap.sh --prefix=$amberprefix > ../boost_config.log
ncerror=$?
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