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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
class Anicalculator(Package):
"""This tool will calculate the bidirectional average nucleotide identity
(gANI) and Alignment Fraction (AF) between two genomes.
Note: A manual download is required for ANIcalculator.
Spack will search your current directory for the download file.
Alternatively, add this file to a mirror so that Spack can find it.
For instructions on how to set up a mirror, see
https://spack.readthedocs.io/en/latest/mirrors.html"""
homepage = "https://ani.jgi.doe.gov/html/download.php?"
url = f"file://{os.getcwd()}/ANIcalculator_v1.tgz"
manual_download = True
version("1", sha256="236596a9a204cbcad162fc66be3506b2530b1f48f4f84d9647ccec3ca7483a43")
depends_on("perl@5:", type="run")
conflicts("platform=darwin", msg="ANIcalculator requires Linux")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("ANIcalculator", prefix.bin)
install("nsimscan", prefix.bin)
install_tree("Log", prefix.bin.Log)
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