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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Aragorn(Package):
"""ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide
sequences."""
homepage = "http://mbio-serv2.mbioekol.lu.se/ARAGORN"
url = "http://www.ansikte.se/ARAGORN/Downloads/aragorn1.2.41.c"
version(
"1.2.41",
sha256="92a31cc5c0b0ad16d4d7b01991989b775f07d2815df135fe6e3eab88f5e97f4a",
expand=False,
)
version(
"1.2.38",
sha256="28aae803d191524b038da582c62c92f190c1925ec69beda56bc21310d8ece522",
expand=False,
)
version(
"1.2.36",
sha256="16e5283d890ff74e52e885c9c34b1c2ba2de72770631122e9178079cd06ea8d2",
expand=False,
)
# fix checksum error
def url_for_version(self, version):
return f"http://www.ansikte.se/ARAGORN/Downloads/aragorn{version}.c"
def install(self, spec, prefix):
cc = Executable(spack_cc)
cc(
"-O3",
"-ffast-math",
"-finline-functions",
"-oaragorn",
"aragorn" + format(spec.version.dotted) + ".c",
)
mkdirp(prefix.bin)
install("aragorn", prefix.bin)
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