1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
import tarfile
from spack.package import *
class Avizo(Package):
"""Avizo is a 3D analysis software for scientific and industrial data.
Wherever three-dimensional imaging data sets need to be processed, in
materials science, geosciences or engineering applications, Avizo offers
abundant state-of-the-art image data processing, exploration and analysis
features within an intuitive workflow and easy-to-use graphical user
interface."""
homepage = "https://www.thermofisher.com/sa/en/home/industrial/electron-microscopy/electron-microscopy-instruments-workflow-solutions/3d-visualization-analysis-software.html"
manual_download = True
license("GPL-3.0")
version(
"2020.1",
sha256="9321aaa276567eebf116e268353c33a4c930d768d22793f921338e1d8cefe991",
url=f"file://{os.getcwd()}/Avizo-20201-Linux64-gcc48.bin",
expand=False,
)
version(
"2019.4",
sha256="a637720535bcbe254ab56368004a9544c64ec36186373fa24f26cee279685248",
url=f"file://{os.getcwd()}/Avizo-20194-Linux64-gcc48.bin",
expand=False,
)
version(
"2019.3",
sha256="be109df81e2f7238f234862367841dae05e76cc62218c1f36b1d9bc9514ce5f7",
url=f"file://{os.getcwd()}/Avizo-20193-Linux64-gcc48.bin",
expand=False,
)
version(
"9.7.0",
sha256="9c9b9e81957387f4218df0c5adbb80717e9ae80ab3ca6ff8da523f7f499dcc5b",
url=f"file://{os.getcwd()}/Avizo-970-Linux64-gcc44.bin",
expand=False,
)
gcc_ver = {"9.7.0": "44", "2019.3": "48", "2019.4": "48", "2020.1": "48"}
install_dir = {
"9.7.0": "Avizo-9.7.0",
"2019.3": join_path("..", "Avizo"),
"2019.4": join_path("..", "Avizo"),
"2020.1": join_path("..", "Avizo"),
}
# Licensing
license_required = True
license_comment = "#"
license_files = ["share/license/password.dat"]
license_vars = ["MCSLMD_LICENSE_FILE"]
def setup_run_environment(self, env):
env.set("MCSLMD_LICENSE_FILE", join_path(self.prefix.share.license, "password.dat"))
def install(self, spec, prefix):
ver = self.version.joined
sh = which("sh")
sh(f"Avizo-{ver}-Linux64-gcc{self.gcc_ver[self.version.string]}.bin", "--noexec", "--keep")
with working_dir("Avizo"):
avizo_tar = tarfile.open(
name="Avizo-{}-Linux64-gcc{}.tar.bz2".format(
self.version, self.gcc_ver[self.version.string]
)
)
avizo_tar.extractall()
with working_dir(self.install_dir[self.version.string]):
install_tree("bin", prefix.bin)
install_tree("lib", prefix.lib)
install_tree("data", prefix.data)
install_tree("share", prefix.share)
install_tree("python", prefix.python)
|
