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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Blat(Package):
"""BLAT (BLAST-like alignment tool) is a pairwise sequence
alignment algorithm."""
homepage = "https://genome.ucsc.edu/FAQ/FAQblat.html"
url = "https://genome-test.gi.ucsc.edu/~kent/src/blatSrc35.zip"
maintainers = ['snehring']
version('37', sha256='88ee2b272d42ab77687c61d200b11f1d58443951069feb7e10226a2509f84cf2')
version('35', sha256='06d9bcf114ec4a4b21fef0540a0532556b6602322a5a2b33f159dc939ae53620')
depends_on('libpng')
depends_on('libuuid', when='@37:')
depends_on('mysql-client', when='@37:')
@when('@37')
def patch(self):
filter_file(r',src\/hg\/', ',NOMATCHME', 'inc/userApp.mk')
def flag_handler(self, name, flags):
if self.spec.satisfies('@35') and name.lower() == 'cflags':
flags.append('-fcommon')
return (flags, None, None)
def setup_build_environment(self, env):
env.set('MACHTYPE', 'x86_64')
def install(self, spec, prefix):
filter_file('CC=.*', 'CC={0}'.format(spack_cc), 'inc/common.mk')
mkdirp(prefix.bin)
make("BINDIR=%s" % prefix.bin)
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