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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Blat(Package):
"""BLAT (BLAST-like alignment tool) is a pairwise sequence
alignment algorithm."""
homepage = "https://genome.ucsc.edu/FAQ/FAQblat.html"
url = "https://genome-test.gi.ucsc.edu/~kent/src/blatSrc35.zip"
maintainers("snehring")
version("37", sha256="88ee2b272d42ab77687c61d200b11f1d58443951069feb7e10226a2509f84cf2")
version("35", sha256="06d9bcf114ec4a4b21fef0540a0532556b6602322a5a2b33f159dc939ae53620")
depends_on("libpng")
depends_on("libuuid", when="@37:")
depends_on("mysql-client", when="@37:")
@when("@37")
def patch(self):
filter_file(r",src\/hg\/", ",NOMATCHME", "inc/userApp.mk")
def flag_handler(self, name, flags):
if self.spec.satisfies("@35") and name.lower() == "cflags":
flags.append("-fcommon")
return (flags, None, None)
def setup_build_environment(self, env):
env.set("MACHTYPE", "x86_64")
def install(self, spec, prefix):
filter_file("CC=.*", "CC={0}".format(spack_cc), "inc/common.mk")
mkdirp(prefix.bin)
make("BINDIR=%s" % prefix.bin)
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