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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Breseq(AutotoolsPackage):
"""breseq is a computational pipeline for finding mutations relative to a
reference sequence in short-read DNA re-sequencing data for haploid
microbial-sized genomes."""
homepage = "http://barricklab.org/breseq"
url = "https://github.com/barricklab/breseq/archive/v0.31.1.tar.gz"
version('0.31.1', 'a4e602d5481f8692833ba3d5a3cd0394')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('bedtools2', type='run')
depends_on('r', type='run')
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