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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Casper(MakefilePackage):
"""CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art
merging tool in terms of accuracy and robustness. Using this
sophisticated merging method, we could get elongated reads from the
forward and reverse reads."""
homepage = "http://best.snu.ac.kr/casper/index.php?name=main"
url = "http://best.snu.ac.kr/casper/program/casper_v0.8.2.tar.gz"
version('0.8.2', '9e83d32ff46b876f33eb1d7b545ec9c2')
depends_on('jellyfish@2.2.3:')
depends_on('boost')
conflicts('%gcc@7.1.0')
def install(self, spec, prefix):
install_tree('.', prefix)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PATH', self.spec.prefix)
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