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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Cdhit(MakefilePackage):
"""CD-HIT is a very widely used program for clustering and comparing
protein or nucleotide sequences."""
homepage = "http://cd-hit.org/"
url = "https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz"
version('4.6.8', 'bdd73ec0cceab6653aab7b31b57c5a8b')
variant('openmp', default=True, description='Compile with multi-threading support')
depends_on('perl', type=('build', 'run'))
def build(self, spec, prefix):
mkdirp(prefix.bin)
if '~openmp' in spec:
make('openmp=no')
else:
make()
def setup_environment(self, spack_env, run_env):
spack_env.set('PREFIX', prefix.bin)
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