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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cleaveland4(Package):
"""CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA
targets"""
homepage = "https://github.com/MikeAxtell/CleaveLand4"
url = "https://github.com/MikeAxtell/CleaveLand4/archive/v4.4.tar.gz"
version('4.4', 'cf62a1de715a612fc8bd5a62364e69db')
depends_on('perl', type=('build', 'run'))
depends_on('perl-math-cdf', type=('build', 'run'))
depends_on('bowtie')
depends_on('viennarna')
depends_on('r', type=('build', 'run'))
depends_on('samtools')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('CleaveLand4.pl', prefix.bin)
with working_dir('GSTAr_v1-0'):
install('GSTAr.pl', prefix.bin)
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