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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class DialignTx(MakefilePackage):
"""DIALIGN-TX: greedy and progressive approaches for segment-based
multiple sequence alignment"""
homepage = "http://dialign-tx.gobics.de/"
url = "http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz"
version('1.0.2', '8ccfb1d91136157324d1e513f184ca29')
build_directory = 'source'
conflicts('%gcc@6:')
def edit(self, spec, prefix):
with working_dir(self.build_directory):
makefile = FileFilter('Makefile')
makefile.filter(' -march=i686 ', ' ')
makefile.filter('CC=gcc', 'CC=%s' % spack_cc)
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install('dialign-tx', prefix.bin)
# t-coffee recognizes as dialign-t
install('dialign-tx', join_path(prefix.bin, 'dialign-t'))
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