blob: acbdd641efbcf1d4778e895eec349bcbaef1db81 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class EaUtils(MakefilePackage):
"""Command-line tools for processing biological sequencing data. Barcode
demultiplexing, adapter trimming, etc. Primarily written to support an
Illumina based pipeline - but should work with any FASTQs."""
homepage = "http://expressionanalysis.github.io/ea-utils/"
url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
version('1.04.807', '5972b9f712920603b7527f46c0063a09')
depends_on('subversion')
depends_on('zlib')
depends_on('gsl')
depends_on('bamtools')
# perl module required for make check, which is included in the default
# target
depends_on('perl', type='build')
build_directory = 'clipper'
def edit(self, spec, prefix):
with working_dir('clipper'):
makefile = FileFilter('Makefile')
makefile.filter('/usr', prefix)
|