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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Falcon(PythonPackage):
"""Falcon: a set of tools for fast aligning long reads for consensus
and assembly.
The Falcon tool kit is a set of simple code collection which I use
for studying efficient assembly algorithm for haploid and diploid genomes.
It has some back-end code implemented in C for speed and some simple
front-end written in Python for convenience."""
homepage = "https://github.com/PacificBiosciences/FALCON"
git = "https://github.com/PacificBiosciences/FALCON.git"
version('2017-05-30', commit='86cec6157291679095ea6080b0cde6561eccc041')
depends_on('py-setuptools', type='run')
depends_on('py-pypeflow', type='run')
depends_on('py-networkx@1.7:1.10', type=['build', 'run'])
depends_on('pacbio-dazz-db', type='run')
depends_on('pacbio-daligner', type='run')
depends_on('pacbio-dextractor', type='run')
depends_on('pacbio-damasker', type='run')
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