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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class FastqScreen(Package):
"""FastQ Screen allows you to screen a library of sequences in FastQ format
against a set of sequence databases so you can see if the composition of
the library matches with what you expect."""
homepage = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/"
url = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/fastq_screen_v0.11.2.tar.gz"
version('0.11.2', 'ef79f16ee553aaa0ab2fc14ea11e5473')
depends_on('perl', type='run')
depends_on('perl-gd-graph', type='run')
depends_on('bowtie')
depends_on('bowtie2')
depends_on('bwa')
depends_on('samtools')
def install(self, spec, prefix):
install_tree('.', prefix.bin)
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