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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Fermikit(MakefilePackage):
"""De novo assembly based variant calling pipeline for Illumina short
reads"""
homepage = "https://github.com/lh3/fermikit"
git = "https://github.com/lh3/fermikit.git"
version('2017-11-7', commit='bf9c7112221577ba110665bddca8f1987250bdc7',
submodules=True)
depends_on('zlib')
depends_on('sse2neon', when='target=aarch64:')
patch('ksw_for_aarch64.patch', when='target=aarch64:')
def install(self, spec, prefix):
install_tree('fermi.kit', prefix.bin)
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