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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# License
# -------
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# Legal Notice
# ------------
# OPENFOAM is a trademark owned by OpenCFD Ltd
# (producer and distributor of the OpenFOAM software via www.openfoam.com).
# The trademark information must remain visible and unadulterated in this
# file and via the "spack info" and comply with the term set by
# http://openfoam.com/legal/trademark-policy.php
#
# This file is not part of OpenFOAM, nor does it constitute a component of an
# OpenFOAM distribution.
#
##############################################################################
#
# Notes
# - mpi handling: WM_MPLIB=USER and provide wmake rules for special purpose
# 'USER and 'USERMPI' mpi implementations.
# The choice of 'USER' vs 'USERMPI' may change in the future.
#
# Changes
# 2017-03-28 Mark Olesen <mark.olesen@esi-group.com>
# - avoid installing intermediate targets.
# - reworked to mirror the openfoam-com package.
# If changes are needed here, consider if they need applying there too.
#
# Known issues
# - Combining +parmgridgen with +float32 probably won't work.
#
##############################################################################
import glob
import re
import os
from spack import *
from spack.environment import EnvironmentModifications
from spack.pkg.builtin.openfoam_com import OpenfoamArch
from spack.pkg.builtin.openfoam_com import add_extra_files
from spack.pkg.builtin.openfoam_com import write_environ
from spack.pkg.builtin.openfoam_com import rewrite_environ_files
import llnl.util.tty as tty
class FoamExtend(Package):
"""The Extend Project is a fork of the OpenFOAM opensource library
for Computational Fluid Dynamics (CFD).
This offering is not approved or endorsed by OpenCFD Ltd,
producer and distributor of the OpenFOAM software via www.openfoam.com,
and owner of the OPENFOAM trademark.
"""
homepage = "http://www.extend-project.de/"
version('4.0', git='http://git.code.sf.net/p/foam-extend/foam-extend-4.0.git')
version('3.2', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.2.git')
version('3.1', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.1.git')
version('3.0', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.0.git')
# variant('int64', default=False,
# description='Compile with 64-bit label')
variant('float32', default=False,
description='Compile with 32-bit scalar (single-precision)')
variant('paraview', default=False,
description='Build paraview plugins (eg, paraFoam)')
variant('scotch', default=True,
description='With scotch for decomposition')
variant('ptscotch', default=True,
description='With ptscotch for decomposition')
variant('metis', default=True,
description='With metis for decomposition')
variant('parmetis', default=True,
description='With parmetis for decomposition')
variant('parmgridgen', default=True,
description='With parmgridgen support')
variant('source', default=True,
description='Install library/application sources and tutorials')
provides('openfoam')
depends_on('mpi')
depends_on('python')
depends_on('zlib')
depends_on('flex', type='build')
depends_on('cmake', type='build')
depends_on('scotch~metis', when='~ptscotch+scotch')
depends_on('scotch~metis+mpi', when='+ptscotch')
depends_on('metis@5:', when='+metis')
depends_on('parmetis', when='+parmetis')
# mgridgen is statically linked
depends_on('parmgridgen', when='+parmgridgen', type='build')
depends_on('paraview@:5.0.1', when='+paraview')
# General patches
common = ['spack-Allwmake', 'README-spack']
assets = []
# Some user config settings
config = {
'label-size': False, # <- No int32/int64 support
'mplib': 'USERMPI', # USER | USERMPI
}
# The openfoam architecture, compiler information etc
_foam_arch = None
# Content for etc/prefs.{csh,sh}
etc_prefs = {}
# Content for etc/config.{csh,sh}/ files
etc_config = {}
phases = ['configure', 'build', 'install']
build_script = './spack-Allwmake' # <- Added by patch() method.
#
# - End of definitions / setup -
#
def setup_environment(self, spack_env, run_env):
"""Add environment variables to the generated module file.
These environment variables come from running:
.. code-block:: console
$ . $WM_PROJECT_DIR/etc/bashrc
"""
# NOTE: Spack runs setup_environment twice.
# 1) pre-build to set up the build environment
# 2) post-install to determine runtime environment variables
# The etc/bashrc is only available (with corrrect content)
# post-installation.
bashrc = join_path(self.projectdir, 'etc', 'bashrc')
minimal = True
if os.path.isfile(bashrc):
# post-install: source the installed bashrc
try:
mods = EnvironmentModifications.from_sourcing_file(
bashrc,
clean=True, # Remove duplicate entries
blacklist=[ # Blacklist these
# Inadvertent changes
# -------------------
'PS1', # Leave unaffected
'MANPATH', # Leave unaffected
# Unneeded bits
# -------------
'FOAM_INST_DIR', # Possibly incorrect
'FOAM_(APP|ETC|SRC|SOLVERS|UTILITIES)',
'FOAM_TEST_.*_DIR',
'WM_NCOMPPROCS',
# 'FOAM_TUTORIALS', # can be useful
# Lots of third-party cruft
# -------------------------
'[A-Z].*_(BIN|LIB|INCLUDE)_DIR',
'[A-Z].*_SYSTEM',
'WM_THIRD_PARTY_.*',
'(BISON|FLEX|CMAKE|ZLIB)_DIR',
'(METIS|PARMETIS|PARMGRIDGEN|SCOTCH)_DIR',
# User-specific
# -------------
'FOAM_RUN',
'(FOAM|WM)_.*USER_.*',
],
whitelist=[ # Whitelist these
'MPI_ARCH_PATH', # Can be needed for compilation
'PYTHON_BIN_DIR',
])
run_env.extend(mods)
minimal = False
tty.info('foam-extend env: {0}'.format(bashrc))
except Exception:
minimal = True
if minimal:
# pre-build or minimal environment
tty.info('foam-extend minimal env {0}'.format(self.prefix))
run_env.set('FOAM_INST_DIR', os.path.dirname(self.projectdir)),
run_env.set('FOAM_PROJECT_DIR', self.projectdir)
run_env.set('WM_PROJECT_DIR', self.projectdir)
for d in ['wmake', self.archbin]: # bin added automatically
run_env.prepend_path('PATH', join_path(self.projectdir, d))
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
"""Location of the OpenFOAM project.
This is identical to the WM_PROJECT_DIR value, but we avoid that
variable since it would mask the normal OpenFOAM cleanup of
previous versions.
"""
spack_env.set('FOAM_PROJECT_DIR', self.projectdir)
@property
def projectdir(self):
"""Absolute location of project directory: WM_PROJECT_DIR/"""
return self.prefix # <- install directly under prefix
@property
def foam_arch(self):
if not self._foam_arch:
self._foam_arch = OpenfoamArch(self.spec, **self.config)
return self._foam_arch
@property
def archbin(self):
"""Relative location of architecture-specific executables"""
return join_path('applications', 'bin', self.foam_arch)
@property
def archlib(self):
"""Relative location of architecture-specific libraries"""
return join_path('lib', self.foam_arch)
def patch(self):
"""Adjust OpenFOAM build for spack.
Where needed, apply filter as an alternative to normal patching."""
add_extra_files(self, self.common, self.assets)
# Adjust ParMGridGen - this is still a mess
files = [
'src/dbns/Make/options',
'src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options' # noqa: E501
]
for f in files:
filter_file(r'-lMGridGen', r'-lmgrid', f, backup=False)
# Adjust for flex version check
files = [
'src/thermophysicalModels/reactionThermo/chemistryReaders/chemkinReader/chemkinLexer.L', # noqa: E501
'src/surfMesh/surfaceFormats/stl/STLsurfaceFormatASCII.L', # noqa: E501
'src/meshTools/triSurface/triSurface/interfaces/STL/readSTLASCII.L', # noqa: E501
'applications/utilities/preProcessing/fluentDataToFoam/fluentDataToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/gambitToFoam/gambitToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/fluent3DMeshToFoam/fluent3DMeshToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/ansysToFoam/ansysToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/fluentMeshToFoam/fluentMeshToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/fluent3DMeshToElmer/fluent3DMeshToElmer.L' # noqa: E501
]
for f in files:
filter_file(
r'#if YY_FLEX_SUBMINOR_VERSION < 34',
r'#if YY_FLEX_MAJOR_VERSION <= 2 && YY_FLEX_MINOR_VERSION <= 5 && YY_FLEX_SUBMINOR_VERSION < 34', # noqa: E501
f, backup=False)
def configure(self, spec, prefix):
"""Make adjustments to the OpenFOAM configuration files in their various
locations: etc/bashrc, etc/config.sh/FEATURE and customizations that
don't properly fit get placed in the etc/prefs.sh file (similiarly for
csh).
"""
# Content for etc/prefs.{csh,sh}
self.etc_prefs = {
'000': { # Sort first
'compilerInstall': 'System',
},
'001': {},
'cmake': {
'CMAKE_DIR': spec['cmake'].prefix,
'CMAKE_BIN_DIR': spec['cmake'].prefix.bin,
},
'python': {
'PYTHON_DIR': spec['python'].home,
'PYTHON_BIN_DIR': spec['python'].home.bin,
},
'flex': {
'FLEX_SYSTEM': 1,
'FLEX_DIR': spec['flex'].prefix,
},
'bison': {
'BISON_SYSTEM': 1,
'BISON_DIR': spec['flex'].prefix,
},
'zlib': {
'ZLIB_SYSTEM': 1,
'ZLIB_DIR': spec['zlib'].prefix,
},
}
# Adjust configuration via prefs - sort second
self.etc_prefs['001'].update(self.foam_arch.foam_dict())
if '+scotch' in spec or '+ptscotch' in spec:
pkg = spec['scotch'].prefix
self.etc_prefs['scotch'] = {
'SCOTCH_SYSTEM': 1,
'SCOTCH_DIR': pkg,
'SCOTCH_BIN_DIR': pkg.bin,
'SCOTCH_LIB_DIR': pkg.lib,
'SCOTCH_INCLUDE_DIR': pkg.include,
}
if '+metis' in spec:
pkg = spec['metis'].prefix
self.etc_prefs['metis'] = {
'METIS_SYSTEM': 1,
'METIS_DIR': pkg,
'METIS_BIN_DIR': pkg.bin,
'METIS_LIB_DIR': pkg.lib,
'METIS_INCLUDE_DIR': pkg.include,
}
if '+parmetis' in spec:
pkg = spec['parmetis'].prefix
self.etc_prefs['parametis'] = {
'PARMETIS_SYSTEM': 1,
'PARMETIS_DIR': pkg,
'PARMETIS_BIN_DIR': pkg.bin,
'PARMETIS_LIB_DIR': pkg.lib,
'PARMETIS_INCLUDE_DIR': pkg.include,
}
if '+parmgridgen' in spec:
pkg = spec['parmgridgen'].prefix
self.etc_prefs['parmgridgen'] = {
'PARMGRIDGEN_SYSTEM': 1,
'PARMGRIDGEN_DIR': pkg,
'PARMGRIDGEN_BIN_DIR': pkg.bin,
'PARMGRIDGEN_LIB_DIR': pkg.lib,
'PARMGRIDGEN_INCLUDE_DIR': pkg.include,
}
if '+paraview' in self.spec:
self.etc_prefs['paraview'] = {
'PARAVIEW_SYSTEM': 1,
'PARAVIEW_DIR': spec['paraview'].prefix,
'PARAVIEW_BIN_DIR': spec['paraview'].prefix.bin,
}
self.etc_prefs['qt'] = {
'QT_SYSTEM': 1,
'QT_DIR': spec['qt'].prefix,
'QT_BIN_DIR': spec['qt'].prefix.bin,
}
# Write prefs files according to the configuration.
# Only need prefs.sh for building, but install both for end-users
write_environ(
self.etc_prefs,
posix=join_path('etc', 'prefs.sh'),
cshell=join_path('etc', 'prefs.csh'))
def build(self, spec, prefix):
"""Build using the OpenFOAM Allwmake script, with a wrapper to source
its environment first.
Only build if the compiler is known to be supported.
"""
self.foam_arch.has_rule(self.stage.source_path)
self.foam_arch.create_rules(self.stage.source_path, self)
args = []
if self.parallel: # Build in parallel? - pass via the environment
os.environ['WM_NCOMPPROCS'] = str(make_jobs)
builder = Executable(self.build_script)
builder(*args)
def install(self, spec, prefix):
"""Install under the projectdir"""
# Fairly ugly since intermediate targets are scattered inside sources
appdir = 'applications'
projdir = os.path.basename(self.projectdir)
mkdirp(self.projectdir, join_path(self.projectdir, appdir))
# Filtering: bashrc, cshrc
edits = {
'WM_PROJECT_INST_DIR': os.path.dirname(self.projectdir),
'WM_PROJECT_DIR': join_path('$WM_PROJECT_INST_DIR', projdir),
}
# All top-level files, except spack build info and possibly Allwmake
if '+source' in spec:
ignored = re.compile(r'^spack-.*')
else:
ignored = re.compile(r'^(Allclean|Allwmake|spack-).*')
files = [
f for f in glob.glob("*")
if os.path.isfile(f) and not ignored.search(f)
]
for f in files:
install(f, self.projectdir)
# Install directories. install applications/bin directly
# Install 'etc' before 'bin' (for symlinks)
for d in ['etc', 'bin', 'wmake', 'lib', join_path(appdir, 'bin')]:
install_tree(
d,
join_path(self.projectdir, d),
symlinks=True)
if '+source' in spec:
subitem = join_path(appdir, 'Allwmake')
install(subitem, join_path(self.projectdir, subitem))
foam_arch_str = str(self.foam_arch)
# Ignore intermediate targets
ignore = lambda p: os.path.basename(p) == foam_arch_str
for d in ['src', 'tutorials']:
install_tree(
d,
join_path(self.projectdir, d),
ignore=ignore,
symlinks=True)
for d in ['solvers', 'utilities']:
install_tree(
join_path(appdir, d),
join_path(self.projectdir, appdir, d),
ignore=ignore,
symlinks=True)
etc_dir = join_path(self.projectdir, 'etc')
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
edits,
posix=join_path(etc_dir, 'bashrc'),
cshell=join_path(etc_dir, 'cshrc'))
self.install_links()
def install_links(self):
"""Add symlinks into bin/, lib/ (eg, for other applications)"""
# Make build log visible - it contains OpenFOAM-specific information
with working_dir(self.projectdir):
os.symlink(
join_path('.spack', 'build.out'),
join_path('log.' + str(self.foam_arch)))
# -----------------------------------------------------------------------------
|