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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Fraggenescan(MakefilePackage):
"""FragGeneScan is an application for finding (fragmented) genes in short
reads. It can also be applied to predict prokaryotic genes in
incomplete assemblies or complete genomes."""
homepage = "https://sourceforge.net/projects/fraggenescan/"
url = "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.31.tar.gz"
version("1.31", sha256="cd3212d0f148218eb3b17d24fcd1fc897fb9fee9b2c902682edde29f895f426c")
version("1.30", sha256="f2d7f0dfa4a5f4bbea295ed865dcbfedf16c954ea1534c2a879ebdcfb8650d95")
def edit(self, spec, prefix):
filter_file("gcc", spack_cc, "Makefile", string=True)
def build(self, spec, prefic):
make("clean")
make("fgs")
def install(self, spec, prefix):
install_tree(".", prefix.bin)
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