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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class IqTree(CMakePackage):
"""IQ-TREE Efficient software for phylogenomic inference"""
homepage = "http://www.iqtree.org"
git = "https://github.com/Cibiv/IQ-TREE.git"
url = "https://github.com/Cibiv/IQ-TREE/archive/v1.6.12.tar.gz"
version('2.0.6', tag='v2.0.6', submodules=True)
version('1.6.12', sha256='9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284')
variant('openmp', default=True, description='Enable OpenMP support.')
variant('mpi', default=False, description='Enable MPI support.')
variant('lsd2', default=True, description='Axctivate Least Squares Dating.')
maintainers = ['ilbiondo']
# Depends on Eigen3 and zlib
depends_on("boost")
depends_on("eigen")
depends_on("zlib")
depends_on('mpi', when='+mpi')
def cmake_args(self):
spec = self.spec
args = []
iqflags = []
if '+lsd2' in spec:
args.append('-DUSE_LSD2=ON')
if '+openmp' in spec:
iqflags.append('omp')
if '+mpi' in spec:
iqflags.append('mpi')
if not iqflags:
iqflags.append('single')
args.append('-DIQTREE_FLAGS=' + ",".join(iqflags))
return args
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