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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Iqtree2(CMakePackage):
"""Efficient and versatile phylogenomic software by maximum likelihood"""
homepage = "http://www.iqtree.org"
url = "https://github.com/iqtree/iqtree2/archive/refs/tags/v2.1.2.tar.gz"
license("GPL-2.0-or-later")
version("2.2.2.7", sha256="407a1a56d352ba9c2152a1d708cd29db872a41c252fbdc7acd8e0de0da8af008")
version("2.2.2", sha256="2e9ce79427b140bca5f48b31fb098f394a21a7c5116bbbada1e3eabdd6efe982")
version("2.1.2", sha256="3aaf5ac7f60d852ac8b733fb82832c049ca48b7203a6a865e99c5af359fcca5a")
variant("lsd2", default=False, description="Build with LSD2 support")
depends_on("boost", type="link")
depends_on("eigen", type="link")
depends_on("zlib-api", type="link")
resource(
name="lsd2-rsrc",
url="https://github.com/tothuhien/lsd2/archive/refs/tags/v.2.4.1.tar.gz",
sha256="3d0921c96edb8f30498dc8a27878a76d785516043fbede4a72eefd84b5955458",
destination="lsd2-rsrc",
when="+lsd2",
)
@run_before("cmake")
def expand_resource(self):
copy_tree(join_path("lsd2-rsrc", "*"), "lsd2")
def cmake_cargs(self):
args = [self.define_from_variant("USE_LSD2", variant="lsd2")]
return args
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