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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import glob
import os
from spack.package import *
class Kraken(Package):
"""Kraken is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies."""
homepage = "https://ccb.jhu.edu/software/kraken/"
url = "https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz"
license("GPL-3.0-or-later")
version("1.1.1", sha256="73e48f40418f92b8cf036ca1da727ca3941da9b78d4c285b81ba3267326ac4ee")
version("1.0", sha256="bade6d83233c26226d02bd427fe0a4d6cd6dc5c0300927e30d41e885a478c378")
depends_on("perl", type=("build", "run"))
# Does NOT support JELLYFISH 2.0. Ver 1.1.11 is the last version of
# JELLYFISH 1.
depends_on("jellyfish@1.1.11", when="@1.0")
def install(self, spec, prefix):
installer = Executable("./install_kraken.sh")
installer(self.stage.source_path)
mkdirp(prefix.bin)
files = glob.iglob("*")
for file in files:
if os.path.isfile(file):
install(file, prefix.bin)
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