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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Last(MakefilePackage):
"""LAST finds similar regions between sequences, and aligns them. It is
designed for comparing large datasets to each other (e.g. vertebrate
genomes and/or large numbers of DNA reads)."""
homepage = "http://last.cbrc.jp/"
url = "http://last.cbrc.jp/last-869.zip"
git = "https://gitlab.com/mcfrith/last.git"
maintainers = ['snehring']
version('1282', commit='4368be912f4759e52b549940276f1adf087f489a')
version('869', sha256='6371a6282bc1bb02a5e5013cc463625f2ce3e7746ff2ea0bdf9fe6b15605a67c')
def edit(self, spec, prefix):
files = ['mat-doc.sh', 'mat-inc.sh', 'seed-doc.sh', 'seed-inc.sh']
if spec.satisfies('@1282:'):
files.append('gc-inc.sh')
with working_dir('build'):
for f in files:
set_executable(f)
def install(self, spec, prefix):
make('install', 'prefix=%s' % prefix)
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