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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class Linkphase3(Package):
    """Haplotype reconstruction in pedigreed populations."""

    homepage = "https://github.com/tdruet/LINKPHASE3"
    url      = "https://github.com/tdruet/LINKPHASE3"

    version('2017-06-14', commit='559913593fc818bb1adb29796a548cf5bf323827',
            git='https://github.com/tdruet/LINKPHASE3.git')

    def install(self, spec, prefix):
        fortran = Executable(self.compiler.fc)
        fortran('LINKPHASE3.f90', '-o', 'LINKPHASE3')
        mkdirp(prefix.bin)
        install('LINKPHASE3', prefix.bin)